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9GJQ

Crystal structure of humanised cereblon from Magnetospirillum gryphiswaldense bound by dihydrouracil-indole compound [1-(1H-indol-6-yl)dihydro-2,4(1H,3H)-pyrimidinedione].

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Cereblon isoform 4polymer10912043.51UniProt (A4TVL0)Magnetospirillum gryphiswaldense
2B
(A)
1-(1H-indol-6-yl)-1,3-diazinane-2,4-dionenon-polymer229.21Chemie (A1IMN)
3C
(A)
ZINC IONnon-polymer65.41Chemie (ZN)
4D
(A)
waterwater18.0116Chemie (HOH)
Sequence modifications
A: 18 - 124 (UniProt: A4TVL0)
PDBExternal DatabaseDetails
Gly 16-expression tag
Ser 17-expression tag
His 52Ala 52engineered mutation
Tyr 54Met 54engineered mutation
His 56Phe 56engineered mutation
His 77Phe 77engineered mutation
Phe 101Tyr 101engineered mutation
Ala 117Arg 117engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight12043.5
Non-Polymers*Number of molecules2
Total formula weight294.6
All*Total formula weight12338.2
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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