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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9GGR

Structure of the HrpA-bound E. coli disome, Class II

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, O
(0, AA)		16S ribosomal RNApolymer1542499690.02GenBank (1758835854)Escherichia coli
2B, P
(1, AB)		Small ribosomal subunit protein uS2polymer24126781.72UniProt (P0A7V0)
Pfam (PF00318)		Escherichia coli30S ribosomal protein S2
3C, Q
(2, AC)		Small ribosomal subunit protein uS3polymer23326031.32UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)		Escherichia coli30S ribosomal protein S3
4D, R
(3, AD)		Small ribosomal subunit protein uS4polymer20623514.22UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)		Escherichia coli30S ribosomal protein S4
5E, S
(4, AE)		Small ribosomal subunit protein uS5polymer16717629.42UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)		Escherichia coli30S ribosomal protein S5
6F, T
(5, AF)		Small ribosomal subunit protein bS6, fully modified isoformpolymer13515727.52UniProt (P02358)
Pfam (PF01250)		Escherichia coli
7G, U
(6, AG)		Small ribosomal subunit protein uS7polymer17920055.22UniProt (P02359)
Pfam (PF00177)		Escherichia coli30S ribosomal protein S7
8H, V
(7, AH)		Small ribosomal subunit protein uS8polymer13014146.62UniProt (P0A7W7)
Pfam (PF00410)		Escherichia coli30S ribosomal protein S8
9I, W
(8, AI)		Small ribosomal subunit protein uS9polymer13014886.32UniProt (P0A7X3)
Pfam (PF00380)		Escherichia coli30S ribosomal protein S9
10J, X
(9, AJ)		Small ribosomal subunit protein uS10polymer10311755.62UniProt (P0A7R5)
Pfam (PF00338)		Escherichia coli30S ribosomal protein S10,Transcription termination/antitermination protein NusE
11K
(A)		A-site tRNApolymer7624485.51GenBank (1319589919)Escherichia coli
12ID, L
(A1, v)		Small ribosomal subunit protein bS21polymer718524.02UniProt (P68679)
Pfam (PF01165)		Escherichia coli30S ribosomal protein S21
13M
(A2)		ATP-dependent RNA helicase HrpApolymer1300149243.51UniProt (P43329)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF04408)
Pfam (PF21010)
Pfam (PF07717)
Pfam (PF11898)		Escherichia coli
14N
(A3)		A-site tRNApolymer7724728.71GenBank (1835963954)Escherichia coli
15PB, Y
(AK, C)		Large ribosomal subunit protein uL1polymer23424765.72UniProt (P0A7L0)
Pfam (PF00687)		Escherichia coli50S ribosomal protein L1
16SB, Z
(AL, F)		Small ribosomal subunit protein uS13polymer11813128.52UniProt (P0A7S9)
Pfam (PF00416)		Escherichia coli30S ribosomal protein S13
17AA, TB
(AM, G)		Small ribosomal subunit protein uS14polymer10111606.62UniProt (P0AG59)
Pfam (PF00253)		Escherichia coli30S ribosomal protein S14
18BA, UB
(AN, H)		Small ribosomal subunit protein uS15polymer8910290.82UniProt (P0ADZ4)
Pfam (PF00312)		Escherichia coli30S ribosomal protein S15
19CA, VB
(AO, I)		Small ribosomal subunit protein bS16polymer829207.62UniProt (P0A7T3)
Pfam (PF00886)		Escherichia coli30S ribosomal protein S16
20DA, WB
(AP, J)		Small ribosomal subunit protein uS17polymer849724.52UniProt (P0AG63)
Pfam (PF00366)		Escherichia coli30S ribosomal protein S17
21EA, XB
(AQ, K)		Small ribosomal subunit protein bS18polymer759005.52UniProt (P0A7T7)
Pfam (PF01084)		Escherichia coli30S ribosomal protein S18
22FA, GD
(AR, t)		Small ribosomal subunit protein uS19polymer9210455.42UniProt (P0A7U3)
Pfam (PF00203)		Escherichia coli30S ribosomal protein S19
23GA, HD
(AS, u)		Small ribosomal subunit protein bS20polymer879708.52UniProt (P0A7U7)
Pfam (PF01649)		Escherichia coli30S ribosomal protein S20
24HA, YB
(AT, L)		Large ribosomal subunit protein bL31Apolymer707887.12UniProt (P0A7M9)
Pfam (PF01197)		Escherichia coli50S ribosomal protein L31
25IA
(AU)		P-site tRNApolymer7624524.61GenBank (1837817527)Escherichia coli
26AC, JA
(AV, N)		23S ribosomal RNApolymer2903941306.22GenBank (170787319)Escherichia coli
27BC, KA
(AW, O)		5S ribosomal RNApolymer12038790.12GenBank (CP035706.1)Escherichia coli
28CC, LA
(AX, P)		Large ribosomal subunit protein uL2polymer27329923.62UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)		Escherichia coli50S ribosomal protein L2
29DC, MA
(AY, Q)		50S ribosomal protein L3polymer20922277.52UniProt (P60438)
Pfam (PF00297)		Escherichia coliribosomal protein uL3
30EC, NA
(AZ, R)		Large ribosomal subunit protein uL4polymer20122121.62UniProt (P60723)
Pfam (PF00573)		Escherichia coli50S ribosomal protein L4
31FC, OA
(Aa, S)		Large ribosomal subunit protein uL5polymer17920333.62UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)		Escherichia coli50S ribosomal protein L5
32GC, PA
(Ab, T)		Large ribosomal subunit protein uL6polymer17718932.82UniProt (P0AG55)
Pfam (PF00347)		Escherichia coli50S ribosomal protein L6
33HC, QA
(Ac, U)		Large ribosomal subunit protein bL9polymer14915789.02UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)		Escherichia coli50S ribosomal protein L9
34IC, RA
(Ad, V)		50S ribosomal protein L11polymer14214894.42UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)		Escherichia coliribosomal protein uL11
35JC, SA
(Ae, W)		Large ribosomal subunit protein uL13polymer14216050.62UniProt (P0AA10)
Pfam (PF00572)		Escherichia coli50S ribosomal protein L13
36KC, TA
(Af, X)		Large ribosomal subunit protein uL14polymer12313565.12UniProt (P0ADY3)
Pfam (PF00238)		Escherichia coli50S ribosomal protein L14
37LC, UA
(Ag, Y)		Large ribosomal subunit protein uL15polymer14415008.52UniProt (P02413)
Pfam (PF00828)		Escherichia coli50S ribosomal protein L15
38MC, VA
(Ah, Z)		50S ribosomal protein L16polymer13615312.32UniProt (P0ADY7)
Pfam (PF00252)		Escherichia coliribosomal protein uL16
39NC, WA
(Ai, a)		Large ribosomal subunit protein bL17polymer12714393.72UniProt (P0AG44)
Pfam (PF01196)		Escherichia coli50S ribosomal protein L17
40OC, XA
(Aj, b)		Large ribosomal subunit protein uL18polymer11712794.72UniProt (P0C018)
Pfam (PF00861)		Escherichia coli50S ribosomal protein L18
41PC, YA
(Ak, c)		Large ribosomal subunit protein bL19polymer11513159.32UniProt (P0A7K6)
Pfam (PF01245)		Escherichia coli50S ribosomal protein L19
42QC, ZA
(Al, d)		Large ribosomal subunit protein bL20polymer11813528.02UniProt (P0A7L3)
Pfam (PF00453)		Escherichia coli50S ribosomal protein L20
43AB, RC
(Am, e)		Large ribosomal subunit protein bL21polymer10311586.42UniProt (P0AG48)
Pfam (PF00829)		Escherichia coli50S ribosomal protein L21
44BB, SC
(An, f)		Large ribosomal subunit protein uL22polymer11012253.42UniProt (P61175)
Pfam (PF00237)		Escherichia coli50S ribosomal protein L22
45CB, TC
(Ao, g)		Large ribosomal subunit protein uL23polymer10011222.22UniProt (P0ADZ0)
Pfam (PF00276)		Escherichia coli50S ribosomal protein L23
46DB, UC
(Ap, h)		Large ribosomal subunit protein uL24polymer10411339.32UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)		Escherichia coli50S ribosomal protein L24
47EB, VC
(Aq, i)		Large ribosomal subunit protein bL25polymer9410713.52UniProt (P68919)
Pfam (PF01386)		Escherichia coli50S ribosomal protein L25
48FB, WC
(Ar, j)		Large ribosomal subunit protein bL27polymer859146.52UniProt (P0A7L8)
Pfam (PF01016)		Escherichia coli50S ribosomal protein L27
49GB, XC
(As, k)		Large ribosomal subunit protein bL28polymer789027.62UniProt (P0A7M2)
Pfam (PF00830)		Escherichia coli50S ribosomal protein L28
50HB, YC
(At, l)		Large ribosomal subunit protein uL29polymer637286.52UniProt (P0A7M6)
Pfam (PF00831)		Escherichia coli50S ribosomal protein L29
51IB, ZC
(Au, m)		Large ribosomal subunit protein uL30polymer596554.82UniProt (P0AG51)
Pfam (PF00327)		Escherichia coli50S ribosomal protein L30
52AD, JB
(Av, n)		Large ribosomal subunit protein bL32polymer576463.42UniProt (P0A7N4)
Pfam (PF01783)		Escherichia coli50S ribosomal protein L32
53BD, KB
(Aw, o)		Large ribosomal subunit protein bL33polymer556388.62UniProt (P0A7N9)
Pfam (PF00471)		Escherichia coli50S ribosomal protein L33
54CD, LB
(Ax, p)		Large ribosomal subunit protein bL34polymer465397.52UniProt (P0A7P5)
Pfam (PF00468)		Escherichia coli50S ribosomal protein L34
55DD, MB
(Ay, q)		Large ribosomal subunit protein bL35polymer657313.02UniProt (P0A7Q1)
Pfam (PF01632)		Escherichia coli50S ribosomal protein L35,Ribosomal protein A
56ED, NB
(Az, r)		Large ribosomal subunit protein bL36Apolymer384377.42UniProt (P0A7Q6)
Pfam (PF00444)		Escherichia coli50S ribosomal protein L36,Ribosomal protein B
57OB
(B)		ATP-dependent RNA helicase HrpApolymer1326152253.71UniProt (P43329)
Pfam (PF00270)
Pfam (PF00271)
Pfam (PF04408)
Pfam (PF21010)
Pfam (PF07717)
Pfam (PF11898)		Escherichia coli
58LD, QB
(D, y)		Small ribosomal subunit protein uS11polymer12913871.02UniProt (P0A7R9)
Pfam (PF00411)		Escherichia coli30S ribosomal protein S11
59MD, RB
(E, z)		Small ribosomal subunit protein uS12polymer12413768.22UniProt (P0A7S3)
Pfam (PF00164)		Escherichia coli30S ribosomal protein S12
60ZB
(M)		P-site tRNApolymer7524060.31GenBank (1207385735)Escherichia coli
61FD
(s)		VemP nascent chainpolymer17920531.11UniProt (by SIFTS) (A0A2I3CPK5)Vibrio alginolyticus
62JD
(w)		messenger RNApolymer5717832.21GenBank (1895674257)Vibrio alginolyticus
63KD
(x)		Large ribosomal subunit protein uL10polymer16517736.61UniProt (P0A7J3)
Pfam (PF00466)		Escherichia coli50S ribosomal protein L10,50S ribosomal protein L8
Sequence modifications
B: 2 - 1300 (UniProt: P43329)
PDBExternal DatabaseDetails
Met -25-initiating methionine
Gly -24-expression tag
His -23-expression tag
His -22-expression tag
His -21-expression tag
His -20-expression tag
His -19-expression tag
His -18-expression tag
His -17-expression tag
His -16-expression tag
Asp -15-expression tag
Tyr -14-expression tag
Asp -13-expression tag
Ile -12-expression tag
Pro -11-expression tag
Thr -10-expression tag
Thr -9-expression tag
Leu -8-expression tag
Glu -7-expression tag
Val -6-expression tag
Leu -5-expression tag
Phe -4-expression tag
Gln -3-expression tag
Gly -2-expression tag
Pro -1-expression tag
Gly 0-expression tag
Thr 1-expression tag
w: 521 - 555 (GenBank: 1895674257)
PDBExternal DatabaseDetails
U 556-expression tag
U 557-expression tag
U 558-expression tag
U 559-expression tag
U 560-expression tag
U 561-expression tag
U 562-expression tag
U 563-expression tag
U 564-expression tag
U 565-expression tag
U 566-expression tag
U 567-expression tag
U 568-expression tag
U 569-expression tag
U 570-expression tag
U 571-expression tag
U 572-expression tag
U 573-expression tag
U 574-expression tag
U 575-expression tag
U 576-expression tag
U 577-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains117
Total formula weight4814219.4
All*Total formula weight4814219.4
*Water molecules are not included.

238895

PDB entries from 2025-07-16

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