9GER
Native dimeric Myeloperoxidase bound to nucleosome core particle, intermediate state; composite map
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (K, M) | Myeloperoxidase light chain | polymer | 108 | 12331.8 | 2 | UniProt (P05164) | Homo sapiens (human) | |
| 2 | B, D (L, N) | Myeloperoxidase light chain | polymer | 466 | 53218.2 | 2 | UniProt (P05164) Pfam (PF03098) | Homo sapiens (human) | |
| 3 | E, I (A, E) | Histone H3.2 | polymer | 99 | 11631.6 | 2 | UniProt (P84233) Pfam (PF00125) | Xenopus laevis (African clawed frog) | |
| 4 | F, J (B, F) | Histone H4 | polymer | 87 | 9990.8 | 2 | UniProt (P62799) Pfam (PF15511) | Xenopus laevis (African clawed frog) | |
| 5 | G, K (C, G) | Histone H2A type 1 | polymer | 111 | 12183.2 | 2 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) | Xenopus laevis (African clawed frog) | |
| 6 | H, L (D, H) | Histone H2B 1.1 | polymer | 96 | 10792.4 | 2 | UniProt (P02281) Pfam (PF00125) | Xenopus laevis (African clawed frog) | H2B1.1 |
| 7 | M (I) | Widom-601 DNA (145-MER) | polymer | 147 | 45610.0 | 1 | synthetic construct | ||
| 8 | N (J) | Widom-601 DNA (145-MER) | polymer | 147 | 45138.8 | 1 | synthetic construct | ||
| 9 | O, P (O, P) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1057.0 | 2 | In PDB GlyTouCan (G82348BZ) | |||
| 10 | Q (K) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 11 | R, V (K, M) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) | |||
| 12 | S, T, W, X (L, N) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 4 | Chemie (NAG) | |||
| 13 | U (L) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) |
Sequence modifications
A, E: 37 - 135 (UniProt: P84233)
C, G: 10 - 120 (UniProt: P06897)
D, H: 26 - 121 (UniProt: P02281)
| PDB | External Database | Details |
|---|---|---|
| Ala 102 | Gly 103 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 99 | Gly 100 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 29 | Ser 33 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 14 |
| Total formula weight | 311045.0 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 2113.9 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 2193.3 | |
| All* | Total formula weight | 315352.2 |
