9GDX
SARS-CoV-2 Spike protein Beta Variant at 4C structural flexibility / heterogeneity analyses
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein,Fibritin | polymer | 1230 | 136142.7 | 3 | UniProt (P0DTC2) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
Sequence modifications
A, B, C: 14 - 1208 (UniProt: P0DTC2)
A, B, C: 1211 - 1237 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| Phe 18 | Leu 18 | variant |
| Ala 80 | Asp 80 | variant |
| Gly 215 | Asp 215 | variant |
| - | Leu 242 | deletion |
| - | Ala 243 | deletion |
| - | Leu 244 | deletion |
| Ile 246 | Arg 246 | conflict |
| Asn 417 | Lys 417 | variant |
| Lys 484 | Glu 484 | variant |
| Tyr 501 | Asn 501 | variant |
| Gly 614 | Asp 614 | variant |
| Gly 682 | Arg 682 | engineered mutation |
| Ser 683 | Arg 683 | engineered mutation |
| Ser 685 | Arg 685 | engineered mutation |
| Val 701 | Ala 701 | variant |
| Pro 986 | Lys 986 | engineered mutation |
| Pro 987 | Val 987 | engineered mutation |
| Gly 1209 | - | linker |
| Ser 1210 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 1232 | Phe 479 | engineered mutation |
| Gly 1238 | - | expression tag |
| Arg 1239 | - | expression tag |
| Ser 1240 | - | expression tag |
| Leu 1241 | - | expression tag |
| Glu 1242 | - | expression tag |
| Val 1243 | - | expression tag |
| Leu 1244 | - | expression tag |
| Phe 1245 | - | expression tag |
| Gln 1246 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 408428.1 | |
| All* | Total formula weight | 408428.1 |






