9GD2
Structure of Chd1 bound to a dinucleosome with a dyad-to-dyad distance of 103 bp.
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E, K, O (A, E, K, O) | Histone H3.2 | polymer | 136 | 15435.1 | 4 | UniProt (P84233) Pfam (PF00125) | Xenopus laevis (African clawed frog) | |
| 2 | B, F, L, P (B, F, L, P) | Histone H4 | polymer | 103 | 11394.4 | 4 | UniProt (P62799) Pfam (PF15511) | Xenopus laevis (African clawed frog) | |
| 3 | C, G, M, R (C, G, M, R) | Histone H2A type 1 | polymer | 130 | 14109.4 | 4 | UniProt (P06897) Pfam (PF00125) Pfam (PF16211) | Xenopus laevis (African clawed frog) | |
| 4 | D, H, N, Q (D, H, N, Q) | Histone H2B 1.1 | polymer | 123 | 13655.9 | 4 | UniProt (P02281) Pfam (PF00125) | Xenopus laevis (African clawed frog) | H2B1.1 |
| 5 | I (I) | DNA (248-MER) | polymer | 248 | 76147.4 | 1 | synthetic construct | ||
| 6 | J (J) | DNA (248-MER) | polymer | 248 | 77015.0 | 1 | synthetic construct | ||
| 7 | S, T, U (S, T, W) | Chromo domain-containing protein 1 | polymer | 1468 | 168496.6 | 3 | UniProt (P32657) Pfam (PF13907) Pfam (PF00385) Pfam (PF00176) Pfam (PF00271) Pfam (PF18196) | Saccharomyces cerevisiae S288C | ATP-dependent helicase CHD1 |
| 8 | V (W) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 9 | W (W) | BERYLLIUM TRIFLUORIDE ION | non-polymer | 66.0 | 1 | Chemie (BEF) | |||
| 10 | X (W) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) |
Sequence modifications
A, E, K, O: 0 - 135 (UniProt: P84233)
C, G, M, R: 0 - 129 (UniProt: P06897)
D, H, N, Q: 1 - 122 (UniProt: P02281)
| PDB | External Database | Details |
|---|---|---|
| Ala 102 | Gly 103 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 99 | Gly 100 | conflict |
| Ser 123 | Ala 124 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Met 0 | - | initiating methionine |
| Thr 29 | Ser 33 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 21 |
| Total formula weight | 877032.0 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 517.5 | |
| All* | Total formula weight | 877549.5 |
