9GAO
Crystal structure of CRBNmidi in complex with 2-(4-(2,6-dioxopiperidin-3-yl)phenoxy)-N-methylacetamide
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C | Protein cereblon | polymer | 329 | 37478.8 | 2 | UniProt (Q96SW2) Pfam (PF02190) Pfam (PF03226) In PDB | Homo sapiens (human) | |
| 2 | A, C | 2-[4-[(3~{R})-2,6-bis(oxidanylidene)piperidin-3-yl]phenoxy]-~{N}-methyl-ethanamide | non-polymer | 276.3 | 2 | Chemie (A1IJM) | |||
| 3 | A, C | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 4 | water | water | 18.0 | 107 | Chemie (HOH) |
Sequence modifications
A, C: 41 - 187 (UniProt: Q96SW2)
A, C: 249 - 426 (UniProt: Q96SW2)
| PDB | External Database | Details |
|---|---|---|
| Ser 40 | - | expression tag |
| Ile 78 | Cys 78 | conflict |
| Val 92 | Ile 92 | conflict |
| Asn 116 | Lys 116 | conflict |
| Glu 134 | Gln 134 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gly 188 | - | linker |
| Ser 189 | - | linker |
| Gly 190 | - | linker |
| Trp 283 | Arg 283 | conflict |
| Asn 287 | Cys 287 | conflict |
| Ser 293 | Val 293 | conflict |
| Asp 302 | Gly 302 | conflict |
| Arg 342 | Leu 342 | conflict |
| Glu 343 | Cys 343 | conflict |
| Ile 359 | Thr 359 | conflict |
| Ile 423 | Leu 423 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 74957.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 683.4 | |
| All* | Total formula weight | 75641.0 |
