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9G6Y

Crystal structure of NUDT5 bound to dNUDT5

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
ADP-sugar pyrophosphatasepolymer21924355.62UniProt (Q9UKK9)
Pfam (PF00293)
Homo sapiens (human)8-oxo-dGDP phosphatase,Nuclear ATP-synthesis protein NUDIX5,Nucleoside diphosphate-linked moiety X motif 5,Nudix motif 5,hNUDT5,YSA1H
2C, D
(A, B)
4-[7-[[5-(3,4-dichlorophenyl)-1,3,4-oxadiazol-2-yl]methyl]-1,3-dimethyl-2,6-bis(oxidanylidene)purin-8-yl]piperazine-1-carboxamidenon-polymer534.42Chemie (A1IIY)
3E
(B)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
PubChem (888)
4F, G
(A, B)
waterwater18.0201Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight48711.2
Non-Polymers*Number of molecules3
Total formula weight1093.0
All*Total formula weight49804.2
*Water molecules are not included.

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PDB entries from 2026-04-08

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