9G6J
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (0) | 60S ribosomal protein L20 | polymer | 172 | 20376.9 | 1 | UniProt (A0A1D8PLC9) Pfam (PF01775) | Candida albicans SC5314 | |
| 2 | B (1) | 25S rRNA | polymer | 3359 | 1085306.3 | 1 | GenBank (1078736431) | Candida albicans SC5314 | |
| 3 | C (2) | Ribosomal 60S subunit protein L21A | polymer | 160 | 18049.9 | 1 | UniProt (A0A1D8PGY0) Pfam (PF01157) | Candida albicans SC5314 | |
| 4 | D (3) | 5S rRNA | polymer | 121 | 38943.1 | 1 | GenBank (1111963231) | Candida albicans SC5314 | |
| 5 | E (4) | 5.8S rRNA | polymer | 158 | 50683.9 | 1 | GenBank (1817956650) | Candida albicans SC5314 | |
| 6 | F (6) | Ribosomal 60S subunit protein L23B | polymer | 137 | 14508.0 | 1 | UniProt (A0A1D8PPT5) Pfam (PF00238) | Candida albicans SC5314 | |
| 7 | G (7) | Ribosomal 60S subunit protein L24A | polymer | 155 | 17430.3 | 1 | UniProt (Q5A6A1) Pfam (PF01246) | Candida albicans SC5314 | |
| 8 | H (8) | Ribosomal 60S subunit protein L25 | polymer | 142 | 15873.6 | 1 | UniProt (A0A1D8PPS1) Pfam (PF03939) Pfam (PF00276) | Candida albicans SC5314 | |
| 9 | I (9) | Ribosomal 60S subunit protein L26B | polymer | 127 | 14215.5 | 1 | UniProt (A0A1D8PCQ5) Pfam (PF16906) | Candida albicans SC5314 | |
| 10 | J (A) | 18S rRNA | polymer | 1787 | 575838.6 | 1 | GenBank (1078736431) | Candida albicans SC5314 | |
| 11 | K (B) | 40S ribosomal protein S0 | polymer | 261 | 28759.3 | 1 | UniProt (O42817) Pfam (PF00318) | Candida albicans SC5314 | |
| 12 | L (C) | 40S ribosomal protein S1 | polymer | 256 | 29041.9 | 1 | UniProt (P40910) Pfam (PF01015) | Candida albicans SC5314 | S3aE |
| 13 | M (D) | Ribosomal 40S subunit protein S2 | polymer | 249 | 26917.3 | 1 | UniProt (Q5A900) Pfam (PF00333) Pfam (PF03719) | Candida albicans SC5314 | |
| 14 | N (E) | Ribosomal 40S subunit protein S3 | polymer | 251 | 27313.6 | 1 | UniProt (A0A1D8PSV5) Pfam (PF07650) Pfam (PF00189) | Candida albicans SC5314 | |
| 15 | O (F) | 40S ribosomal protein S4 | polymer | 262 | 29435.4 | 1 | UniProt (A0A1D8PCI6) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Candida albicans SC5314 | |
| 16 | P (G) | Ribosomal 40S subunit protein S5 | polymer | 225 | 25319.9 | 1 | UniProt (Q5AG43) Pfam (PF00177) | Candida albicans SC5314 | |
| 17 | Q (H) | 40S ribosomal protein S6 | polymer | 236 | 27146.5 | 1 | UniProt (A0A1D8PL99) Pfam (PF01092) | Candida albicans SC5314 | |
| 18 | R (I) | 40S ribosomal protein S7 | polymer | 186 | 21285.8 | 1 | UniProt (Q5AJ93) Pfam (PF01251) | Candida albicans SC5314 | |
| 19 | S (J) | 40S ribosomal protein S8 | polymer | 206 | 22802.0 | 1 | UniProt (Q59T44) Pfam (PF01201) | Candida albicans SC5314 | |
| 20 | T (K) | Ribosomal 40S subunit protein S9B | polymer | 189 | 21765.1 | 1 | UniProt (A0A1D8PGY8) Pfam (PF00163) Pfam (PF01479) | Candida albicans SC5314 | |
| 21 | U (L) | Ribosomal 40S subunit protein S10A | polymer | 118 | 13836.8 | 1 | UniProt (A0A1D8PI15) Pfam (PF03501) | Candida albicans SC5314 | |
| 22 | V (M) | Ribosomal 40S subunit protein S11A | polymer | 155 | 17638.6 | 1 | UniProt (A0A1D8PN83) Pfam (PF16205) Pfam (PF00366) | Candida albicans SC5314 | |
| 23 | W (N) | 40S ribosomal protein S12 | polymer | 143 | 15715.9 | 1 | UniProt (Q5ADQ6) Pfam (PF01248) | Candida albicans SC5314 | |
| 24 | X (O) | Ribosomal 40S subunit protein S13 | polymer | 151 | 16976.8 | 1 | UniProt (A0A1D8PPE0) Pfam (PF08069) Pfam (PF00312) | Candida albicans SC5314 | |
| 25 | Y (P) | Ribosomal 40S subunit protein S14B | polymer | 132 | 14052.1 | 1 | UniProt (A0A1D8PDT3) Pfam (PF00411) | Candida albicans SC5314 | |
| 26 | Z (Q) | Ribosomal 40S subunit protein S15 | polymer | 142 | 15967.8 | 1 | UniProt (A0A1D8PK22) Pfam (PF00203) | Candida albicans SC5314 | |
| 27 | AA (T) | Ribosomal 40S subunit protein S18B | polymer | 145 | 17023.8 | 1 | UniProt (A0A1D8PQQ5) Pfam (PF00416) | Candida albicans SC5314 | |
| 28 | BA (R) | Ribosomal 40S subunit protein S16A | polymer | 142 | 15769.5 | 1 | UniProt (A0A1D8PCW6) Pfam (PF00380) | Candida albicans SC5314 | |
| 29 | CA (S) | Ribosomal 40S subunit protein S17B | polymer | 137 | 15770.3 | 1 | UniProt (A0A1D8PEY9) Pfam (PF00833) | Candida albicans SC5314 | |
| 30 | DA (U) | Ribosomal 40S subunit protein S19A | polymer | 145 | 16097.2 | 1 | UniProt (A0A1D8PK61) Pfam (PF01090) | Candida albicans SC5314 | |
| 31 | EA (V) | Ribosomal 40S subunit protein S20 | polymer | 119 | 13366.5 | 1 | UniProt (Q5A389) Pfam (PF00338) | Candida albicans SC5314 | |
| 32 | FA (W) | 40S ribosomal protein S21 | polymer | 87 | 9652.8 | 1 | UniProt (A0A1D8PCG7) Pfam (PF01249) | Candida albicans SC5314 | |
| 33 | GA (X) | 40S ribosomal protein S22-A | polymer | 130 | 14807.2 | 1 | UniProt (Q96W54) Pfam (PF00410) | Candida albicans SC5314 | |
| 34 | HA (Y) | Ribosomal 40S subunit protein S23B | polymer | 145 | 16000.8 | 1 | UniProt (A0A1D8PDU3) Pfam (PF00164) | Candida albicans SC5314 | |
| 35 | IA (Z) | 40S ribosomal protein S24 | polymer | 135 | 15546.9 | 1 | UniProt (Q5A7K0) Pfam (PF01282) | Candida albicans SC5314 | |
| 36 | JA (a) | 40S ribosomal protein S25 | polymer | 105 | 11633.8 | 1 | UniProt (A0A1D8PNQ6) Pfam (PF03297) | Candida albicans SC5314 | |
| 37 | KA (b) | 40S ribosomal protein S26 | polymer | 119 | 13606.1 | 1 | UniProt (Q5ALV6) Pfam (PF01283) | Candida albicans SC5314 | |
| 38 | LA (c) | 40S ribosomal protein S27 | polymer | 82 | 8982.5 | 1 | UniProt (A0A1D8PTI7) Pfam (PF01667) | Candida albicans SC5314 | |
| 39 | MA (d) | Ribosomal 40S subunit protein S28B | polymer | 67 | 7536.8 | 1 | UniProt (A0A1D8PQN0) Pfam (PF01200) | Candida albicans SC5314 | |
| 40 | NA (e) | Ribosomal 40S subunit protein S29A | polymer | 56 | 6615.6 | 1 | UniProt (A0A1D8PTR4) Pfam (PF00253) | Candida albicans SC5314 | |
| 41 | OA (f) | 40S ribosomal protein S30 | polymer | 63 | 7127.4 | 1 | UniProt (A0A1D8PSK2) Pfam (PF04758) | Candida albicans SC5314 | |
| 42 | PA (g) | Ubiquitin-ribosomal 40S subunit protein S31 fusion protein | polymer | 193 | 22615.5 | 1 | UniProt (Q5A109) Pfam (PF00240) Pfam (PF01599) | Candida albicans SC5314 | |
| 43 | QA (h) | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 317 | 34593.9 | 1 | UniProt (P83774) Pfam (PF00400) | Candida albicans SC5314 | Cytoplasmic antigenic protein 1 |
| 44 | RA (j) | Ribosomal 60S subunit protein L2A | polymer | 254 | 27366.6 | 1 | UniProt (A0A1D8PF08) Pfam (PF00181) Pfam (PF03947) | Candida albicans SC5314 | |
| 45 | SA (k) | 60S ribosomal protein L3 | polymer | 389 | 44040.8 | 1 | UniProt (Q59LS1) Pfam (PF00297) | Candida albicans SC5314 | |
| 46 | TA (l) | Ribosomal 60S subunit protein L4B | polymer | 363 | 39282.4 | 1 | UniProt (A0A1D8PFV1) Pfam (PF00573) Pfam (PF14374) | Candida albicans SC5314 | |
| 47 | UA (m) | Ribosomal 60S subunit protein L5 | polymer | 298 | 34558.0 | 1 | UniProt (Q5AGZ7) Pfam (PF17144) Pfam (PF14204) | Candida albicans SC5314 | |
| 48 | VA (n) | 60S ribosomal protein L6 | polymer | 176 | 19798.0 | 1 | UniProt (A0A1D8PCX8) Pfam (PF01159) | Candida albicans SC5314 | |
| 49 | WA (o) | Ribosomal 60S subunit protein L7A | polymer | 241 | 27447.0 | 1 | UniProt (A0A1D8PDL6) Pfam (PF08079) Pfam (PF00327) | Candida albicans SC5314 | |
| 50 | XA (p) | 60S ribosomal protein L8 | polymer | 262 | 28549.4 | 1 | UniProt (Q5ANA1) Pfam (PF01248) | Candida albicans SC5314 | |
| 51 | YA (q) | Ribosomal 60S subunit protein L9B | polymer | 191 | 21755.2 | 1 | UniProt (Q5AEN2) Pfam (PF00347) | Candida albicans SC5314 | |
| 52 | ZA (r) | Ribosomal 60S subunit protein L10 | polymer | 220 | 25236.3 | 1 | UniProt (Q5AIB8) Pfam (PF00252) | Candida albicans SC5314 | |
| 53 | AB (s) | Ribosomal 60S subunit protein L11B | polymer | 174 | 19859.8 | 1 | UniProt (A0A1D8PHW1) Pfam (PF00281) Pfam (PF00673) | Candida albicans SC5314 | |
| 54 | BB (t) | 60S ribosomal protein L13 | polymer | 202 | 23105.8 | 1 | UniProt (O59931) Pfam (PF01294) | Candida albicans SC5314 | |
| 55 | CB (u) | Ribosomal 60S subunit protein L14B | polymer | 131 | 14748.5 | 1 | UniProt (A0A1D8PFL9) Pfam (PF01929) | Candida albicans SC5314 | |
| 56 | DB (v) | Ribosomal protein L15 | polymer | 204 | 24389.3 | 1 | UniProt (Q5A6R1) Pfam (PF00827) | Candida albicans SC5314 | |
| 57 | EB (w) | Ribosomal 60S subunit protein L16A | polymer | 200 | 22685.8 | 1 | UniProt (Q5AB87) Pfam (PF00572) | Candida albicans SC5314 | |
| 58 | FB (x) | Ribosomal 60S subunit protein L17B | polymer | 185 | 21002.9 | 1 | UniProt (Q59TE0) Pfam (PF00237) | Candida albicans SC5314 | |
| 59 | GB (y) | Ribosomal 60S subunit protein L18A | polymer | 186 | 20817.4 | 1 | UniProt (A0A1D8PK43) Pfam (PF17135) | Candida albicans SC5314 | |
| 60 | HB (z) | Ribosomal protein L19 | polymer | 190 | 21942.8 | 1 | UniProt (A0A1D8PK40) Pfam (PF01280) | Candida albicans SC5314 | |
| 61 | IB (AA) | 60S ribosomal protein L27 | polymer | 136 | 15551.4 | 1 | UniProt (A0A1D8PFG4) Pfam (PF01777) | Candida albicans SC5314 | |
| 62 | JB (AB) | Ribosomal 60S subunit protein L28 | polymer | 149 | 16703.4 | 1 | UniProt (A0A1D8PSC5) Pfam (PF00828) | Candida albicans SC5314 | |
| 63 | KB (AC) | 60S ribosomal protein L29 | polymer | 63 | 7135.3 | 1 | UniProt (A0A1D8PF57) Pfam (PF01779) | Candida albicans SC5314 | |
| 64 | LB (AD) | Ribosomal 60S subunit protein L30 | polymer | 106 | 11520.4 | 1 | UniProt (A0A1D8PM75) Pfam (PF01248) | Candida albicans SC5314 | |
| 65 | MB (AE) | Ribosomal 60S subunit protein L31B | polymer | 112 | 12993.1 | 1 | UniProt (A0A1D8PHF5) Pfam (PF01198) | Candida albicans SC5314 | |
| 66 | NB (AF) | Ribosomal 60S subunit protein L32 | polymer | 131 | 14993.7 | 1 | UniProt (A0A1D8PPN6) Pfam (PF01655) | Candida albicans SC5314 | |
| 67 | OB (AG) | Ribosomal 60S subunit protein L33A | polymer | 107 | 12138.2 | 1 | UniProt (A0A1D8PHH4) Pfam (PF01247) | Candida albicans SC5314 | |
| 68 | PB (AH) | Ribosomal 60S subunit protein L34B | polymer | 122 | 13774.3 | 1 | UniProt (A0A1D8PDZ1) Pfam (PF01199) | Candida albicans SC5314 | |
| 69 | QB (AI) | Ribosomal 60S subunit protein L35A | polymer | 120 | 14118.8 | 1 | UniProt (A0A1D8PK30) Pfam (PF00831) | Candida albicans SC5314 | |
| 70 | RB (AJ) | 60S ribosomal protein L36 | polymer | 99 | 11096.2 | 1 | UniProt (A0A1D8PH21) Pfam (PF01158) | Candida albicans SC5314 | |
| 71 | SB (AK) | Ribosomal protein L37 | polymer | 90 | 10102.8 | 1 | UniProt (A0A1D8PF45) Pfam (PF01907) | Candida albicans SC5314 | |
| 72 | TB (AL) | Ribosomal 60S subunit protein L38 | polymer | 78 | 8911.5 | 1 | UniProt (A0A1D8PG16) Pfam (PF01781) | Candida albicans SC5314 | |
| 73 | UB (AM) | 60S ribosomal protein L39 | polymer | 51 | 6347.5 | 1 | UniProt (A0A1D8PDT4) Pfam (PF00832) | Candida albicans SC5314 | |
| 74 | VB (AN) | Rpl40bp | polymer | 52 | 6078.4 | 1 | UniProt (A0A1D8PL68) Pfam (PF01020) | Candida albicans SC5314 | |
| 75 | WB (AO) | Small ribosomal subunit protein eS32 | polymer | 25 | 3396.3 | 1 | UniProt (P9WER7) Pfam (PF05162) | Candida albicans SC5314 | 60S ribosomal protein L41,Large ribosomal subunit protein eL41 |
| 76 | XB (AP) | Ribosomal 60S subunit protein L42A | polymer | 106 | 12285.7 | 1 | UniProt (A0A1D8PEV4) Pfam (PF00935) | Candida albicans SC5314 | |
| 77 | YB (AQ) | Ribosomal 60S subunit protein L43A | polymer | 92 | 10136.8 | 1 | UniProt (A0A1D8PP14) Pfam (PF01780) | Candida albicans SC5314 | |
| 78 | BC, ZB (PT, AT) | tRNA-fMet | polymer | 77 | 24802.8 | 2 | GenBank (1848851804) | Escherichia coli | |
| 79 | AC (MR) | mRNA | polymer | 39 | 12383.5 | 1 | Candida albicans SC5314 | ||
| 80 | CC (1) | SPERMINE (FULLY PROTONATED FORM) | non-polymer | 206.4 | 1 | Chemie (SPK) | |||
| 81 | AD, DC, EC, FC, GC... (AT, 1, A) | GENETICIN | non-polymer | 496.6 | 16 | Chemie (GET) | |||
| 82 | SC, TC, UC, VC, WC... (b, e, AH, AK, AN...) | ZINC ION | non-polymer | 65.4 | 7 | Chemie (ZN) | |||
| 83 | YC (AQ) | (11R,12S)- Mefloquine | non-polymer | 378.3 | 1 | Chemie (YMZ) |
Sequence modifications
P: 1 - 132 (UniProt: A0A1D8PDT3)
| PDB | External Database | Details |
|---|---|---|
| Ias 119 | Asp 119 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 80 |
| Total formula weight | 3137806.4 | |
| Non-Polymers* | Number of molecules | 25 |
| Total formula weight | 8987.4 | |
| All* | Total formula weight | 3146793.8 |
