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9G1V

Yeast RNA polymerase I elongation complex stalled by an apurinic site

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
DNA-directed RNA polymerase I subunit RPA190polymer1664186677.01UniProt (P10964)Saccharomyces cerevisiae (brewer's yeast)DNA-directed RNA polymerase I 190 kDa polypeptide,A190,DNA-directed RNA polymerase I largest subunit
2B
(B)
DNA-directed RNA polymerase I subunit RPA135polymer1203135910.31UniProt (P22138)Saccharomyces cerevisiae (brewer's yeast)DNA-directed RNA polymerase I 135 kDa polypeptide,A135,DNA-directed RNA polymerase I polypeptide 2,RNA polymerase I subunit 2
3C
(C)
DNA-directed RNA polymerases I and III subunit RPAC1polymer33537732.61UniProt (P07703)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I and III subunit AC1,C37,DNA-directed RNA polymerases I and III 40 kDa polypeptide,C40
4D
(D)
DNA-directed RNA polymerase I subunit RPA14polymer13714599.11UniProt (P50106)Saccharomyces cerevisiae (brewer's yeast)A14,DNA-directed RNA polymerase I 14 kDa polypeptide
5E
(E)
DNA-directed RNA polymerases I, II, and III subunit RPABC1polymer21525117.11UniProt (P20434)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I,II,and III subunit ABC1,ABC27,DNA-directed RNA polymerases I,and III 27 kDa polypeptide
6F
(F)
DNA-directed RNA polymerases I, II, and III subunit RPABC2polymer15517931.81UniProt (P20435)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I,II,and III subunit ABC2,ABC23,DNA-directed RNA polymerases I,and III 23 kDa polypeptide
7G
(G)
DNA-directed RNA polymerase I subunit RPA43polymer32636264.91UniProt (P46669)Saccharomyces cerevisiae (brewer's yeast)A43,DNA-directed DNA-dependent RNA polymerase 36 kDa polypeptide
8H
(H)
DNA-directed RNA polymerases I, II, and III subunit RPABC3polymer14616525.41UniProt (P20436)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I,II,and III subunit ABC3,ABC14.4,ABC14.5,DNA-directed RNA polymerases I,and III 14.5 kDa polypeptide
9I
(I)
DNA-directed RNA polymerase I subunit RPA12polymer12513676.61UniProt (P32529)Saccharomyces cerevisiae (brewer's yeast)A12,A12.2,DNA-directed RNA polymerase I 13.7 kDa polypeptide
10J
(J)
DNA-directed RNA polymerases I, II, and III subunit RPABC5polymer708290.71UniProt (P22139)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I,II,and III subunit ABC5,ABC10-beta,ABC8,DNA-directed RNA polymerases I,and III 8.3 kDa polypeptide
11K
(K)
DNA-directed RNA polymerases I and III subunit RPAC2polymer14216167.91UniProt (P28000)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I and III subunit AC2,AC19,DNA-directed RNA polymerases I and III 16 kDa polypeptide,RPA19
12L
(L)
DNA-directed RNA polymerases I, II, and III subunit RPABC4polymer707730.01UniProt (P40422)Saccharomyces cerevisiae (brewer's yeast)RNA polymerases I,II,and III subunit ABC4,ABC10-alpha
13M
(M)
DNA-directed RNA polymerase I subunit RPA49polymer41546721.71UniProt (Q01080)Saccharomyces cerevisiae (brewer's yeast)A49,DNA-directed RNA polymerase I 49 kDa polypeptide
14N
(N)
DNA-directed RNA polymerase I subunit RPA34polymer23326933.51UniProt (P47006)Saccharomyces cerevisiae (brewer's yeast)A34,DNA-directed DNA-dependent RNA polymerase 34.5 kDa polypeptide,A34.5
15O
(R)
RNApolymer123883.41Saccharomyces cerevisiae
16P
(S)
Non-template DNApolymer3811553.41Saccharomyces cerevisiae
17Q
(T)
Template DNApolymer3811529.41Saccharomyces cerevisiae
18R
(A)
MAGNESIUM IONnon-polymer24.31Chemie (MG)
19S, T, U, V, W...
(A, B, I, J, L)
ZINC IONnon-polymer65.46Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains17
Total formula weight617244.8
Non-Polymers*Number of molecules7
Total formula weight416.8
All*Total formula weight617661.5
*Water molecules are not included.

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PDB entries from 2025-06-18

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