9G09
Structure of human RNF213 bound to the secreted effector IpaH2.5 from Shigella flexneri
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | E3 ubiquitin-protein ligase IpaH2.5 | polymer | 563 | 63651.7 | 1 | UniProt (A0A0H2USC0) Pfam (PF12468) Pfam (PF14496) | Shigella flexneri 5a str. M90T | Invasion plasmid antigen 2.5 |
| 2 | B (A) | E3 ubiquitin-protein ligase RNF213 | polymer | 5247 | 596450.3 | 1 | UniProt (Q63HN8) Pfam (PF00097) Pfam (PF20173) | Homo sapiens (human) | ALK lymphoma oligomerization partner on chromosome 17,E3 ubiquitin-lipopolysaccharide ligase RNF213,Mysterin,RING finger protein 213 |
| 3 | C (A) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 4 | D (A) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 5 | E, F, G (A) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) |
Sequence modifications
A: 1 - 5207 (UniProt: Q63HN8)
| PDB | External Database | Details |
|---|---|---|
| Met -39 | - | initiating methionine |
| Ala -38 | - | expression tag |
| Ser -37 | - | expression tag |
| Trp -36 | - | expression tag |
| Ser -35 | - | expression tag |
| His -34 | - | expression tag |
| Pro -33 | - | expression tag |
| Gln -32 | - | expression tag |
| Phe -31 | - | expression tag |
| Glu -30 | - | expression tag |
| Lys -29 | - | expression tag |
| Gly -28 | - | expression tag |
| Ser -27 | - | expression tag |
| Ala -26 | - | expression tag |
| Gly -25 | - | expression tag |
| Ser -24 | - | expression tag |
| Ala -23 | - | expression tag |
| Ala -22 | - | expression tag |
| Gly -21 | - | expression tag |
| Ser -20 | - | expression tag |
| Gly -19 | - | expression tag |
| Ala -18 | - | expression tag |
| Gly -17 | - | expression tag |
| Trp -16 | - | expression tag |
| Ser -15 | - | expression tag |
| His -14 | - | expression tag |
| Pro -13 | - | expression tag |
| Gln -12 | - | expression tag |
| Phe -11 | - | expression tag |
| Glu -10 | - | expression tag |
| Lys -9 | - | expression tag |
| Glu -8 | - | expression tag |
| Asn -7 | - | expression tag |
| Leu -6 | - | expression tag |
| Tyr -5 | - | expression tag |
| Phe -4 | - | expression tag |
| Gln -3 | - | expression tag |
| Ala -2 | - | expression tag |
| Met -1 | - | expression tag |
| Ser 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 660101.9 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 727.7 | |
| All* | Total formula weight | 660829.7 |
