9FZL
Perkinsus marinus respiratory supercomplex CII2CIII2CIV2 in an intermediate state
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, XA (2M, 2m) | Succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial | polymer | 604 | 65705.4 | 2 | Pfam (PF00890) Pfam (PF02910) UniProt (by SIFTS) (C5LYE7) | Perkinsus marinus | |
| 2 | B, YA (2N, 2n) | Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial | polymer | 259 | 29680.3 | 2 | Pfam (PF13085) Pfam (PF13534) UniProt (by SIFTS) (C5LYT4) | Perkinsus marinus | |
| 3 | C, ZA (2O, 2o) | SDHG | polymer | 160 | 17795.6 | 2 | UniProt (C5KTH2) | Perkinsus marinus | |
| 4 | AB, D (2P, 2p) | Transmembrane protein | polymer | 158 | 18583.9 | 2 | UniProt (by SIFTS) (C5LSM2) | Perkinsus marinus | |
| 5 | BB, E (2Q, 2q) | Kinesin-like protein | polymer | 69 | 8005.3 | 2 | UniProt (by SIFTS) (C5L083) | Perkinsus marinus | |
| 6 | CB, F (2R, 2r) | SDHH | polymer | 117 | 13456.6 | 2 | UniProt (by SIFTS) (A0A7J6R9U3) | Perkinsus marinus | |
| 7 | DB, G (2S, 2s) | DUF6827 domain-containing protein | polymer | 165 | 18889.3 | 2 | UniProt (C5L1Y6) Pfam (PF20715) | Perkinsus marinus | SDHE |
| 8 | EB, H (2T, 2t) | Rab-GAP TBC domain-containing protein | polymer | 82 | 9878.2 | 2 | UniProt (by SIFTS) (C5KJI4) | Perkinsus marinus | |
| 9 | FB, I (2U, 2u) | Syntaxin-1A | polymer | 48 | 5534.1 | 2 | UniProt (by SIFTS) (A0A7J6MZQ8) | Perkinsus marinus | |
| 10 | GB, J (2V, 2v) | SDHI | polymer | 87 | 10148.9 | 2 | UniProt (C5LCL6) Pfam (PF23513) | Perkinsus marinus | |
| 11 | HB, K (3A, 3a) | Mitochondrial processing peptidase beta subunit | polymer | 454 | 51513.8 | 2 | Pfam (PF00675) Pfam (PF05193) UniProt (by SIFTS) (C5LJ83) | Perkinsus marinus | |
| 12 | IB, L (3B, 3b) | Alpha-MPP | polymer | 496 | 55322.8 | 2 | Pfam (PF05193) Pfam (PF00675) UniProt (by SIFTS) (C5KS02) | Perkinsus marinus | |
| 13 | JB, M (3C, 3c) | Iso-1-cytochrome c | polymer | 241 | 27275.7 | 2 | UniProt (C5K8N0) Pfam (PF02167) | Perkinsus marinus | CytC1 |
| 14 | KB, N (3D, 3d) | QCR8 | polymer | 95 | 11763.5 | 2 | UniProt (C5L848) | Perkinsus marinus | |
| 15 | LB, O (3E, 3e) | QCR9 | polymer | 92 | 11417.1 | 2 | Pfam (PF05365) UniProt (by SIFTS) (A0A7J6MEE8) | Perkinsus marinus | |
| 16 | MB, P (3F, 3f) | QCR10 | polymer | 84 | 10329.9 | 2 | UniProt (C5KTV6) | Perkinsus marinus | |
| 17 | NB, Q (3G, 3g) | Cytochrome b | polymer | 354 | 42452.5 | 2 | UniProt (by SIFTS) (F8SRJ0) | Perkinsus marinus | |
| 18 | OB, R (3H, 3h) | Ubiquinol-cytochrome c reductase, iron-sulfur subunit, putative | polymer | 326 | 37320.4 | 2 | Pfam (PF00355) UniProt (by SIFTS) (C5KYR8) | Perkinsus marinus | |
| 19 | PB, S (3I, 3i) | Ubiquinol-cytochrome C reductase complex 14kD subunit, putative | polymer | 176 | 20940.1 | 2 | UniProt (C5LWC5) Pfam (PF02271) UniProt (by SIFTS) (C5LWC6) | Perkinsus marinus | QCR7 |
| 20 | QB, T (3J, 3j) | Ubiquinol-cytochrome c reductase complex 7.8 kDa protein, putative | polymer | 92 | 10852.3 | 2 | UniProt (C5L0W9) Pfam (PF02320) | Perkinsus marinus | QCR6 |
| 21 | RB, U (3K, 3k) | Cu-binding protein | polymer | 79 | 8656.1 | 2 | UniProt (by SIFTS) (C5K628) | Perkinsus marinus | |
| 22 | SB, V (3L, 3l) | Aurora kinase | polymer | 69 | 7794.0 | 2 | UniProt (C5LDF5) | Perkinsus marinus | |
| 23 | TB, W (40, 41) | Cytochrome c oxidase subunit 3 | polymer | 230 | 28167.9 | 2 | Perkinsus marinus | ||
| 24 | UB, X (4A, 4a) | Cytochrome c oxidase subunit 6B | polymer | 100 | 12040.4 | 2 | Pfam (PF02297) UniProt (by SIFTS) (C5K7H0) | Perkinsus marinus | |
| 25 | VB, Y (4B, 4b) | Peptidase M14 carboxypeptidase A domain-containing protein | polymer | 93 | 10475.3 | 2 | UniProt (C5KED7) | Perkinsus marinus | COX36;Cytochrome c oxidase subunit 36 |
| 26 | WB, Z (4C, 4c) | Cytochrome c oxidase subunit 40 | polymer | 75 | 8828.9 | 2 | UniProt (C5L7H1) | Perkinsus marinus | COX40 |
| 27 | AA, XB (4D, 4d) | Cytochrome c oxidase subunit 34 | polymer | 90 | 11072.6 | 2 | UniProt (by SIFTS) (C5LUF4) | Perkinsus marinus | |
| 28 | BA, YB (4E, 4e) | Merozoite surface protein, putative | polymer | 152 | 18761.6 | 2 | UniProt (C5L0U1) | Perkinsus marinus | COX6A;Cytochrome c oxidase subunit 6A |
| 29 | CA, ZB (4F, 4f) | Ubiquitin, putative | polymer | 73 | 8624.9 | 2 | UniProt (C5KBY9) | Perkinsus marinus | COX39;Cytochrome c oxidase subunit 39 |
| 30 | AC, DA (4G, 4g) | Cytochrome c oxidase subunit 33 | polymer | 100 | 12070.7 | 2 | UniProt (C5KJE7) | Perkinsus marinus | COX33 |
| 31 | BC, EA (4H, 4h) | Cytochrome c oxidase subunit 30 | polymer | 141 | 15973.0 | 2 | UniProt (by SIFTS) (C5L104) | Perkinsus marinus | |
| 32 | CC, FA (4I, 4i) | Cytochrome c oxidase subunit 6C | polymer | 196 | 23967.1 | 2 | UniProt (C5LPW2) | Perkinsus marinus | COX6C |
| 33 | DC, GA (4J, 4j) | Cytochrome c oxidase subunit 24 | polymer | 186 | 21376.3 | 2 | UniProt (by SIFTS) (C5L533) | Perkinsus marinus | |
| 34 | EC, HA (4K, 4k) | Cytochrome c oxidase subunit 37 | polymer | 93 | 10228.1 | 2 | UniProt (C5KST9) | Perkinsus marinus | COX37 |
| 35 | FC, IA (4L, 4l) | Cytochrome c oxidase subunit 7A | polymer | 122 | 15282.6 | 2 | UniProt (C5KPD1) | Perkinsus marinus | COX7A |
| 36 | GC, JA (4M, 4m) | Cytochrome c oxidase subunit 35 | polymer | 98 | 10932.7 | 2 | UniProt (C5LDS7) | Perkinsus marinus | COX35 |
| 37 | HC, KA (4N, 4n) | Cytochrome c oxidase polypeptide II | polymer | 131 | 14594.8 | 2 | UniProt (C5LND1) Pfam (PF00116) UniProt (by SIFTS) (C5K5E4) | Perkinsus marinus | COX2B;Cytochrome c oxidase subunit 2B |
| 38 | IC, LA (4O, 4o) | GINS subunit domain-containing protein | polymer | 47 | 5427.3 | 2 | UniProt (C5LG07) | Perkinsus marinus | COX2C;Cytochrome c oxidase subunit 2C |
| 39 | JC, MA (4P, 4p) | Cytochrome c oxidase subunit 2A | polymer | 180 | 21273.1 | 2 | UniProt (by SIFTS) (C5LK31) | Perkinsus marinus | |
| 40 | KC, NA (4Q, 4q) | Cytochrome c oxidase subunit 1 | polymer | 459 | 52063.5 | 2 | UniProt (by SIFTS) (F8SRI9) | Perkinsus marinus | |
| 41 | LC, OA (4R, 4r) | Cytochrome c oxidase subunit 32 | polymer | 103 | 12904.8 | 2 | UniProt (C5KSX3) | Perkinsus marinus | COX32 |
| 42 | MC, PA (4S, 4s) | Cytochrome c oxidase subunit 7C | polymer | 65 | 7711.7 | 2 | UniProt (C5LPK3) UniProt (by SIFTS) (C5L3V7) | Perkinsus marinus | COX7C |
| 43 | NC, QA (4T, 4t) | Cytochrome c oxidase subunit 13 | polymer | 121 | 14002.0 | 2 | UniProt (by SIFTS) (C5K4P8) | Perkinsus marinus | |
| 44 | OC, RA (4U, 4u) | Amino acid transporter transmembrane domain-containing protein | polymer | 91 | 10665.1 | 2 | UniProt (C5LG64) | Perkinsus marinus | COX38;Cytochrome c oxidase subunit 38 |
| 45 | PC, SA (4V, 4v) | Cytochrome c oxidase subunit 4 | polymer | 185 | 21719.8 | 2 | UniProt (by SIFTS) (C5LR54) | Perkinsus marinus | |
| 46 | QC, TA (4W, 4w) | Cytochrome c oxidase subunit 19 | polymer | 141 | 16881.5 | 2 | UniProt (C5L0W2) | Perkinsus marinus | COX19 |
| 47 | RC, UA (4X, 4x) | Cytochrome Coxidase subunit, putative | polymer | 226 | 26522.1 | 2 | Pfam (PF01215) UniProt (by SIFTS) (C5LUB2) | Perkinsus marinus | |
| 48 | SC, VA (4Y, 4y) | Cytochrome c oxidase subunit 18 | polymer | 107 | 12898.2 | 2 | UniProt (by SIFTS) (C5LUI5) | Perkinsus marinus | |
| 49 | TC, WA (4Z, 4z) | Cytochrome c oxidase subunit 31 | polymer | 186 | 22296.6 | 2 | UniProt (by SIFTS) (C5LYX8) | Perkinsus marinus | |
| 50 | UC, XF (2M, 2m) | FLAVIN-ADENINE DINUCLEOTIDE | non-polymer | 785.5 | 2 | Chemie (FAD) | |||
| 51 | DE, GH, VC, YF (3H, 3h, 2N, 2n) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 4 | Chemie (FES) | |||
| 52 | WC, ZF (2N, 2n) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) | |||
| 53 | AG, XC (2n, 2N) | FE3-S4 CLUSTER | non-polymer | 295.8 | 2 | Chemie (F3S) | |||
| 54 | BG, CF, FI, YC (2n, 4Q, 4q, 2N) | POTASSIUM ION | non-polymer | 39.1 | 4 | Chemie (K) PubChem (813) | |||
| 55 | AH, DG, ED, FD, HG... (3f, 2o, 2P, 2p, 2R...) | 1,2-dioleoyl-sn-glycero-3-phosphoethanolamine | non-polymer | 744.0 | 32 | Chemie (PEE) PubChem (108229) PubChem (44891344) PubChem (54095275) PubChem (14238554) PubChem (5909904) PubChem (9546757) PubChem (6437392) PubChem (99655478) PubChem (99655479) PubChem (9546744) PubChem (138113035) PubChem (171729549) | |||
| 56 | AD, BD, EG, FE, FG... (2O, 2o, 3H, 2P, 3h...) | 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 790.1 | 18 | Chemie (PC1) PubChem (65146) PubChem (94190) PubChem (10417837) | |||
| 57 | AE, AI, BI, CD, CG... (3G, 4l, 4m, 2O, 2o...) | CARDIOLIPIN | non-polymer | 1464.0 | 60 | Chemie (CDL) PubChem (17753886) PubChem (5287898) | |||
| 58 | BE, CE, EH, FH, KD... (3G, 3g, 2S, 2s, 3D...) | Ubiquinone-8 | non-polymer | 727.1 | 8 | Chemie (UQ8) PubChem (1157) PubChem (176478936) PubChem (5283546) | |||
| 59 | PD, SG (3C, 3c) | HEME C | non-polymer | 618.5 | 2 | Chemie (HEC) | |||
| 60 | BH, CH, YD, ZD (3g, 3G) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
| 61 | OE, RH (40, 41) | Digitonin | non-polymer | 1229.3 | 2 | Chemie (AJP) | |||
| 62 | PE, RE, SH, UH (4C, 4D, 4c, 4d) | 2-(HEXADECANOYLOXY)-1-[(PHOSPHONOOXY)METHYL]ETHYL HEXADECANOATE | non-polymer | 648.9 | 4 | Chemie (LPP) PubChem (3099) PubChem (446066) PubChem (11061290) | |||
| 63 | CI, ZE (4n, 4N) | DINUCLEAR COPPER ION | non-polymer | 127.1 | 2 | Chemie (CUA) | |||
| 64 | AF, DI (4Q, 4q) | COPPER (II) ION | non-polymer | 63.5 | 2 | Chemie (CU) PubChem (27099) | |||
| 65 | BF, EI (4Q, 4q) | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) PubChem (888) | |||
| 66 | DF, EF, GI, HI (4Q, 4q) | HEME-A | non-polymer | 852.8 | 4 | Chemie (HEA) | |||
| 67 | FF, II (4Q, 4q) | PEROXIDE ION | non-polymer | 32.0 | 2 | Chemie (PER) | |||
| 68 | NF, OF, QI, RI, UF... (4T, 4t, 4X, 4x) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 98 |
| Total formula weight | 1880156.6 | |
| Non-Polymers* | Number of molecules | 162 |
| Total formula weight | 148471.6 | |
| All* | Total formula weight | 2028628.2 |
