9FYG
Structure of the Sabia Virus spike complex H157M mutant in a closed conformation
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, E, F (a, c, b) | Glycoprotein G2 | polymer | 246 | 28552.5 | 3 | UniProt (Q90037) Pfam (PF00798) | Sabia virus | GP2 |
| 2 | B, C, D (A, C, B) | Glycoprotein G1 | polymer | 196 | 22587.8 | 3 | UniProt (Q90037) Pfam (PF00798) | Sabia virus | GP1 |
| 3 | AA, G, L, R, X... (X, D, I, O, U...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 4 | H, J, N, P, T... (E, G, K, M, Q...) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 6 | In PDB GlyTouCan (G22768VO) | |||
| 5 | I, K, M, O, Q... (F, H, J, L, N...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 9 | In PDB GlyTouCan (G15407YE) | |||
| 6 | BA, CA, DA, FA, GA... (a, A, C, B, c...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 12 | Chemie (NAG) | |||
| 7 | EA (a) | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 8 | OA, PA, QA, RA, SA... (a, A, C, B, c...) | water | water | 18.0 | 756 | Chemie (HOH) |
Sequence modifications
a, c, b: 255 - 488 (UniProt: Q90037)
A, C, B: 59 - 254 (UniProt: Q90037)
| PDB | External Database | Details |
|---|---|---|
| Gly 489 | - | expression tag |
| Gly 490 | - | expression tag |
| Gly 491 | - | expression tag |
| Ser 492 | - | expression tag |
| Asp 493 | - | expression tag |
| Tyr 494 | - | expression tag |
| Lys 495 | - | expression tag |
| Asp 496 | - | expression tag |
| Asp 497 | - | expression tag |
| Asp 498 | - | expression tag |
| Asp 499 | - | expression tag |
| Lys 500 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 157 | His 157 | engineered mutation |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 153421.0 | |
| Branched | Number of molecules | 21 |
| Total formula weight | 13290.2 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 2719.9 | |
| All* | Total formula weight | 169431.1 |
