9FTZ
CIII2/CIV respiratory supercomplex from Mycobacterium smegmatis with lansoprazole sulfide
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (O) | Cytochrome bc1 complex cytochrome c subunit | polymer | 278 | 29109.9 | 1 | UniProt (A0R050) Pfam (PF00034) Pfam (PF13442) UniProt (by SIFTS) (I7FPH1) | Mycolicibacterium smegmatis | |
| 2 | B, N (M, G) | Cytochrome bc1 complex cytochrome c subunit | polymer | 408 | 44869.4 | 2 | UniProt (A0R051) Pfam (PF19297) Pfam (PF00355) UniProt (by SIFTS) (I7GD61) | Mycolicibacterium smegmatis | Cytochrome bc1 complex Rieske iron-sulfur subunit |
| 3 | C, M (N, H) | Cytochrome bc1 complex cytochrome b subunit | polymer | 556 | 61514.3 | 2 | UniProt (A0R052) Pfam (PF13631) | Mycolicibacterium smegmatis | Cytochrome bc1 reductase complex subunit QcrB |
| 4 | D (P) | Transmembrane protein | polymer | 100 | 11329.9 | 1 | UniProt (A0QVH4) Pfam (PF10939) | Mycolicibacterium smegmatis | |
| 5 | E (S) | Probable cytochrome c oxidase subunit 3 | polymer | 203 | 22196.9 | 1 | UniProt (A0R049) Pfam (PF00510) | Mycolicibacterium smegmatis | Cytochrome aa3 subunit 3 |
| 6 | F (T) | Cytochrome c oxidase polypeptide 4 | polymer | 139 | 15177.4 | 1 | UniProt (A0R056) Pfam (PF12270) | Mycolicibacterium smegmatis | Cytochrome aa3 subunit 4,Cytochrome c oxidase polypeptide IV |
| 7 | G (R) | Cytochrome c oxidase subunit 1 | polymer | 575 | 64163.0 | 1 | UniProt (A0A2U9PNL2) Pfam (PF00115) UniProt (by SIFTS) (A0R0M4) | Mycolicibacterium smegmatis | |
| 8 | H (Q) | cytochrome-c oxidase | polymer | 341 | 38077.5 | 1 | UniProt (A0R057) Pfam (PF00116) | Mycolicibacterium smegmatis | Cytochrome aa3 subunit 2 |
| 9 | I (U) | Cytochrome c oxidase subunit | polymer | 79 | 8365.5 | 1 | UniProt (A0R1B6) | Mycolicibacterium smegmatis | |
| 10 | J (V) | Uncharacterized protein MSMEG_4692/MSMEI_4575 | polymer | 157 | 15911.0 | 1 | UniProt (A0R1B5) Pfam (PF17174) | Mycolicibacterium smegmatis | |
| 11 | K (W) | LpqE protein | polymer | 186 | 19119.0 | 1 | UniProt (A0R562) | Mycolicibacterium smegmatis | |
| 12 | L, O (Y, c) | Superoxide dismutase [Cu-Zn] | polymer | 236 | 23232.4 | 2 | UniProt (A0QQQ1) Pfam (PF00080) | Mycolicibacterium smegmatis | |
| 13 | DA, HB, IB, P, T (N, H, O) | MENAQUINONE-9 | non-polymer | 785.2 | 5 | Chemie (MQ9) | |||
| 14 | GA, Q (P, O) | acyl-phosphatidyl-myo-inositol dimannoside (AcPIM2) | non-polymer | 1415.8 | 2 | Chemie (WUO) | |||
| 15 | R, S (O) | HEME C | non-polymer | 618.5 | 2 | Chemie (HEC) | |||
| 16 | JB, U (G, M) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 17 | KB, V, YA (G, M, W) | (2R)-2-(hexadecanoyloxy)-3-{[(S)-hydroxy{[(1R,2R,3R,4R,5R,6S)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propyl (9S)-9-methyloctadecanoate | non-polymer | 853.1 | 3 | Chemie (9YF) | |||
| 18 | HA, MB, NB, W (S, G, M) | (1R)-2-(dodecanoyloxy)-1-[(phosphonooxy)methyl]ethyl tetradecanoate | non-polymer | 564.7 | 4 | Chemie (7PH) | |||
| 19 | LB, X (G, M) | [(2~{R})-3-[[(1~{S},2~{R},3~{S},4~{S},5~{R},6~{R})-2-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3-[(2~{R},3~{S},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-4,5-bis(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxymethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-3,4,5-tris(oxidanyl)-6-[(2~{R},3~{S},4~{S},5~{S},6~{R})-3,4,5-tris(oxidanyl)-6-(undecanoyloxymethyl)oxan-2-yl]oxy-cyclohexyl]oxy-oxidanyl-phosphoryl]oxy-2-undecanoyloxy-propyl] (10~{R})-10-methyldodecanoate | non-polymer | 1677.8 | 2 | Chemie (IZL) | |||
| 20 | CA, DB, GB, Y (N, H) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 4 | Chemie (HEM) | |||
| 21 | AA, CB, EA, EB, FA... (N, H, P, R) | CARDIOLIPIN | non-polymer | 1464.0 | 9 | Chemie (CDL) | |||
| 22 | BA (N) | Lansoprazole sulfide | non-polymer | 353.4 | 1 | Chemie (A1IGA) | |||
| 23 | IA, KA, RA, SA, XA (S, T, R, Q) | TRIDECANE | non-polymer | 184.4 | 5 | Chemie (TRD) | |||
| 24 | JA (S) | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 1 | Chemie (3PE) | |||
| 25 | MA, NA (R) | HEME-A | non-polymer | 852.8 | 2 | Chemie (HEA) | |||
| 26 | OA, VA, WA (R, Q) | COPPER (II) ION | non-polymer | 63.5 | 3 | Chemie (CU) | |||
| 27 | QA (R) | CALCIUM ION | non-polymer | 40.1 | 1 | Chemie (CA) | |||
| 28 | BB, PB, TA (Y, c, R) | (2S)-1-(hexadecanoyloxy)propan-2-yl (10S)-10-methyloctadecanoate | non-polymer | 595.0 | 3 | Chemie (9XX) | |||
| 29 | UA (R) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 30 | AB, OB, ZA (Y, c, W) | PALMITIC ACID | non-polymer | 256.4 | 3 | Chemie (PLM) | |||
| 31 | AC, BC, CC, QB, RB... (Y, H, G, O, M...) | water | water | 18.0 | 348 | Chemie (HOH) |
Sequence modifications
O: 27 - 294 (UniProt: A0R050)
N, H: 1 - 546 (UniProt: A0R052)
P: 18 - 100 (UniProt: A0QVH4)
R: 21 - 575 (UniProt: A0A2U9PNL2)
| PDB | External Database | Details |
|---|---|---|
| Met 17 | - | initiating methionine |
| His 18 | - | expression tag |
| His 19 | - | expression tag |
| His 20 | - | expression tag |
| His 21 | - | expression tag |
| His 22 | - | expression tag |
| His 23 | - | expression tag |
| Met 24 | - | expression tag |
| Gly 25 | - | expression tag |
| Ser 26 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Lys 547 | - | expression tag |
| Leu 548 | - | expression tag |
| Asp 549 | - | expression tag |
| Tyr 550 | - | expression tag |
| Lys 551 | - | expression tag |
| Asp 552 | - | expression tag |
| Asp 553 | - | expression tag |
| Asp 554 | - | expression tag |
| Asp 555 | - | expression tag |
| Lys 556 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Ser 2 | - | expression tag |
| Ser 3 | - | expression tag |
| Thr 4 | - | expression tag |
| Gln 5 | - | expression tag |
| Asp 6 | - | expression tag |
| Arg 7 | - | expression tag |
| Ser 8 | - | expression tag |
| Gln 9 | - | expression tag |
| Leu 10 | - | expression tag |
| Asp 11 | - | expression tag |
| Pro 12 | - | expression tag |
| Glu 13 | - | expression tag |
| Glu 14 | - | expression tag |
| Gln 15 | - | expression tag |
| Pro 16 | - | expression tag |
| Val 17 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| Val 2 | - | expression tag |
| Ala 3 | - | expression tag |
| Glu 4 | - | expression tag |
| Ala 5 | - | expression tag |
| Pro 6 | - | expression tag |
| Pro 7 | - | expression tag |
| Ile 8 | - | expression tag |
| Gly 9 | - | expression tag |
| Glu 10 | - | expression tag |
| Leu 11 | - | expression tag |
| Glu 12 | - | expression tag |
| Ala 13 | - | expression tag |
| Arg 14 | - | expression tag |
| Arg 15 | - | expression tag |
| Pro 16 | - | expression tag |
| Phe 17 | - | expression tag |
| Pro 18 | - | expression tag |
| Glu 19 | - | expression tag |
| Arg 20 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 15 |
| Total formula weight | 482682.2 | |
| Non-Polymers* | Number of molecules | 53 |
| Total formula weight | 38700.8 | |
| All* | Total formula weight | 521383.0 |
