9F9Y
SARS-CoV-2 BA-2.87.1 Spike ectodomain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C | Spike glycoprotein,Fibritin | polymer | 1263 | 139502.5 | 3 | UniProt (P0DTC2) UniProt (P10104) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 | S glycoprotein,E2,Peplomer protein,Collar protein,Whisker antigen control protein |
| 2 | D, E, F, G, H... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
| 3 | B, A, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 39 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1158 (UniProt: P0DTC2)
A, B, C: 1186 - 1212 (UniProt: P10104)
| PDB | External Database | Details |
|---|---|---|
| - | Cys 15 | deletion |
| - | Val 16 | deletion |
| - | Asn 17 | deletion |
| - | Leu 18 | deletion |
| - | Thr 19 | deletion |
| - | Thr 20 | deletion |
| - | Arg 21 | deletion |
| - | Thr 22 | deletion |
| - | Gln 23 | deletion |
| - | Leu 24 | deletion |
| - | Pro 25 | deletion |
| - | Pro 26 | deletion |
| Ser 15 | Ala 27 | conflict |
| - | His 69 | deletion |
| - | Val 70 | deletion |
| Asp 61 | Gly 75 | conflict |
| Phe 84 | Ser 98 | conflict |
| Ala 112 | Val 126 | conflict |
| - | Cys 136 | deletion |
| - | Asn 137 | deletion |
| - | Asp 138 | deletion |
| - | Pro 139 | deletion |
| - | Phe 140 | deletion |
| - | Leu 141 | deletion |
| - | Gly 142 | deletion |
| - | Val 143 | deletion |
| - | Tyr 144 | deletion |
| - | Tyr 145 | deletion |
| - | His 146 | deletion |
| Leu 127 | Trp 152 | conflict |
| Ser 165 | Arg 190 | variant |
| Gly 188 | Val 213 | variant |
| Gly 190 | Asp 215 | variant |
| Asp 314 | Gly 339 | variant |
| Phe 346 | Ser 371 | variant |
| Pro 348 | Ser 373 | variant |
| Phe 350 | Ser 375 | variant |
| Ala 351 | Thr 376 | variant |
| Asn 380 | Asp 405 | variant |
| Ser 383 | Arg 408 | variant |
| Thr 392 | Lys 417 | variant |
| Lys 415 | Asn 440 | variant |
| Asn 419 | Lys 444 | conflict |
| Gly 420 | Val 445 | conflict |
| Met 427 | Leu 452 | conflict |
| Lys 435 | Asn 460 | variant |
| Asn 452 | Ser 477 | variant |
| Lys 456 | Asn 481 | conflict |
| Ala 459 | Glu 484 | variant |
| Arg 473 | Gln 498 | variant |
| Tyr 476 | Asn 501 | variant |
| His 480 | Tyr 505 | variant |
| Gly 589 | Asp 614 | variant |
| Ser 596 | Pro 621 | conflict |
| Gly 617 | Val 642 | conflict |
| Tyr 630 | His 655 | conflict |
| Arg 654 | Asn 679 | conflict |
| His 656 | Pro 681 | conflict |
| Gly 657 | Arg 682 | conflict |
| Ser 658 | Arg 683 | conflict |
| Ser 660 | Arg 685 | conflict |
| Pro 666 | Ser 691 | conflict |
| Lys 739 | Asn 764 | variant |
| Ile 766 | Thr 791 | conflict |
| His 771 | Asp 796 | variant |
| Gly 911 | Asp 936 | conflict |
| His 929 | Gln 954 | variant |
| Lys 944 | Asn 969 | variant |
| Pro 961 | Lys 986 | engineered mutation |
| Pro 962 | Val 987 | engineered mutation |
| Asp 1159 | - | linker |
| Arg 1160 | - | linker |
| Leu 1161 | - | linker |
| Asn 1162 | - | linker |
| Glu 1163 | - | linker |
| Val 1164 | - | linker |
| Ala 1165 | - | linker |
| Lys 1166 | - | linker |
| Asn 1167 | - | linker |
| Leu 1168 | - | linker |
| Asn 1169 | - | linker |
| Glu 1170 | - | linker |
| Ser 1171 | - | linker |
| Leu 1172 | - | linker |
| Ile 1173 | - | linker |
| Asp 1174 | - | linker |
| Leu 1175 | - | linker |
| Gln 1176 | - | linker |
| Glu 1177 | - | linker |
| Leu 1178 | - | linker |
| Gly 1179 | - | linker |
| Lys 1180 | - | linker |
| Tyr 1181 | - | linker |
| Glu 1182 | - | linker |
| Gln 1183 | - | linker |
| Gly 1184 | - | linker |
| Ser 1185 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Leu 1207 | Phe 479 | engineered mutation |
| Gly 1213 | - | expression tag |
| Arg 1214 | - | expression tag |
| Ser 1215 | - | expression tag |
| Leu 1216 | - | expression tag |
| Glu 1217 | - | expression tag |
| Val 1218 | - | expression tag |
| Leu 1219 | - | expression tag |
| Phe 1220 | - | expression tag |
| Gln 1221 | - | expression tag |
| Gly 1222 | - | expression tag |
| Pro 1223 | - | expression tag |
| Gly 1224 | - | expression tag |
| His 1225 | - | expression tag |
| His 1226 | - | expression tag |
| His 1227 | - | expression tag |
| His 1228 | - | expression tag |
| His 1229 | - | expression tag |
| His 1230 | - | expression tag |
| His 1231 | - | expression tag |
| His 1232 | - | expression tag |
| Gly 1233 | - | expression tag |
| Ser 1234 | - | expression tag |
| Ala 1235 | - | expression tag |
| Trp 1236 | - | expression tag |
| Ser 1237 | - | expression tag |
| His 1238 | - | expression tag |
| Pro 1239 | - | expression tag |
| Gln 1240 | - | expression tag |
| Phe 1241 | - | expression tag |
| Glu 1242 | - | expression tag |
| Lys 1243 | - | expression tag |
| Gly 1244 | - | expression tag |
| Gly 1245 | - | expression tag |
| Gly 1246 | - | expression tag |
| Ser 1247 | - | expression tag |
| Gly 1248 | - | expression tag |
| Gly 1249 | - | expression tag |
| Gly 1250 | - | expression tag |
| Ser 1251 | - | expression tag |
| Gly 1252 | - | expression tag |
| Gly 1253 | - | expression tag |
| Ser 1254 | - | expression tag |
| Ala 1255 | - | expression tag |
| Trp 1256 | - | expression tag |
| Ser 1257 | - | expression tag |
| His 1258 | - | expression tag |
| Pro 1259 | - | expression tag |
| Gln 1260 | - | expression tag |
| Phe 1261 | - | expression tag |
| Glu 1262 | - | expression tag |
| Lys 1263 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 418507.5 | |
| Branched | Number of molecules | 9 |
| Total formula weight | 3819.6 | |
| Non-Polymers* | Number of molecules | 39 |
| Total formula weight | 8627.1 | |
| All* | Total formula weight | 430954.2 |
