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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9F9S

Yeast SDD1 Disome with Mbf1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(CC)		Uncharacterized protein YEL057Cpolymer23327272.61UniProt (P39983)Saccharomyces cerevisiae (brewer's yeast)Suppressor of degenerative death
2B
(CM)		mRNApolymer4112722.21Saccharomyces cerevisiae (brewer's yeast)
3C
(CN)		Multiprotein-bridging factor 1polymer15116434.71UniProt (O14467)
Pfam (PF08523)
Pfam (PF01381)		Saccharomyces cerevisiae (brewer's yeast)Suppressor of frameshift mutations protein 13
4D
(CP)		tRNA P-site, stalledpolymer7624469.51Saccharomyces cerevisiae (brewer's yeast)
5E
(L1)		Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)polymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae (brewer's yeast)
6F, SD
(L2, M2)		Saccharomyces cerevisiae S288C 5.8S ribosomal RNApolymer15850682.92GenBank (1331532632)Saccharomyces cerevisiae (brewer's yeast)
7G, QD
(L3, M3)		Saccharomyces cerevisiae S288C 5S ribosomal RNApolymer12138951.12GenBank (1329886537)Saccharomyces cerevisiae (brewer's yeast)
8H
(LA)		60S ribosomal protein L6-Bpolymer17620024.51UniProt (P05739)
Pfam (PF01159)		Saccharomyces cerevisiae (brewer's yeast)L17,Large ribosomal subunit protein eL6-B,RP18,YL16
9HE, I
(LB, MB)		60S ribosomal protein L7-Apolymer24427686.32UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)		Saccharomyces cerevisiae (brewer's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
10J, JE
(LC, MC)		60S ribosomal protein L8-Apolymer25628175.82UniProt (P17076)
Pfam (PF01248)		Saccharomyces cerevisiae (brewer's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
11K, LE
(LD, MD)		60S ribosomal protein L9-Apolymer19121605.12UniProt (P05738)
Pfam (PF00347)		Saccharomyces cerevisiae (brewer's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
12L, NE
(LE, ME)		60S ribosomal protein L10polymer22125410.52UniProt (P41805)
Pfam (PF00252)		Saccharomyces cerevisiae (brewer's yeast)L9,Large ribosomal subunit protein uL16,Ubiquinol-cytochrome C reductase complex subunit VI-requiring protein
13M, PE
(LF, MF)		60S ribosomal protein L11-Apolymer17419755.72UniProt (P0C0W9)
Pfam (PF00281)
Pfam (PF00673)		Saccharomyces cerevisiae (brewer's yeast)L16,Large ribosomal subunit protein uL5-A,RP39,YL22
14N, RE
(LG, MG)		60S ribosomal protein L13-Apolymer19922604.22UniProt (Q12690)
Pfam (PF01294)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL13-A
15O, TE
(LH, MH)		60S ribosomal protein L14-Apolymer13815195.12UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL14-A
16P, VE
(LI, MI)		60S ribosomal protein L15-Apolymer20424482.42UniProt (P05748)
Pfam (PF00827)		Saccharomyces cerevisiae (brewer's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
17ND, Q
(LJ, MJ)		60S ribosomal protein L16-Apolymer19922247.22UniProt (P26784)
Pfam (PF00572)		Saccharomyces cerevisiae (brewer's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
18PD, R
(LK, MK)		60S ribosomal protein L17-Apolymer18420589.52UniProt (P05740)
Pfam (PF00237)		Saccharomyces cerevisiae (brewer's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
19RD, S
(LL, ML)		60S ribosomal protein L18-Apolymer18620609.32UniProt (P0CX49)
Pfam (PF17135)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL18-A,RP28
20T, UD
(LM, MM)		60S ribosomal protein L19-Apolymer18921762.32UniProt (P0CX82)
Pfam (PF01280)		Saccharomyces cerevisiae (brewer's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
21U, WD
(LN, MN)		60S ribosomal protein L20-Apolymer17220478.92UniProt (P0CX23)
Pfam (PF01775)		Saccharomyces cerevisiae (brewer's yeast)L18a,Large ribosomal subunit protein eL20-A
22V, ZD
(LO, MO)		60S ribosomal protein L21-Apolymer16018279.32UniProt (Q02753)
Pfam (PF01157)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL21-A
23DE, W
(La, Ma)		60S ribosomal protein L23-Apolymer13714494.02UniProt (P0CX41)
Pfam (PF00238)		Saccharomyces cerevisiae (brewer's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
24GF, X
(Lb, Mb)		60S ribosomal protein L43-Apolymer9210113.02UniProt (P0CX25)
Pfam (PF01780)		Saccharomyces cerevisiae (brewer's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
25FF, Y
(Lc, Mc)		60S ribosomal protein L42-Apolymer10612246.72UniProt (P0CX27)
Pfam (PF00935)		Saccharomyces cerevisiae (brewer's yeast)L41,Large ribosomal subunit protein eL42-A,YL27,YP44
26EF, Z
(Ld, Md)		60S ribosomal protein L41-Apolymer253354.22UniProt (P0CX86)
Pfam (PF05162)		Saccharomyces cerevisiae (brewer's yeast)L47,Large ribosomal subunit protein eL41-A,YL41
27AA, DF
(Le, Me)		Ubiquitin-60S ribosomal protein L40polymer12814583.12UniProt (P0CH08)
Pfam (PF00240)
Pfam (PF01020)		Saccharomyces cerevisiae (brewer's yeast)
28BA, CF
(Lf, Mf)		60S ribosomal protein L39polymer516358.62UniProt (P04650)
Pfam (PF00832)		Saccharomyces cerevisiae (brewer's yeast)L46,Large ribosomal subunit protein eL39,YL40
29BF, CA
(Lg, Mg)		60S ribosomal protein L38polymer788845.62UniProt (P49167)
Pfam (PF01781)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL38
30AF, DA
(Lh, Mh)		60S ribosomal protein L37-Apolymer889877.42UniProt (P49166)
Pfam (PF01907)		Saccharomyces cerevisiae (brewer's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
31EA, ZE
(Li, Mi)		60S ribosomal protein L36-Apolymer10011151.32UniProt (P05745)
Pfam (PF01158)		Saccharomyces cerevisiae (brewer's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
32FA, YE
(Lj, Mj)		60S ribosomal protein L35-Apolymer12013942.62UniProt (P0CX84)
Pfam (PF00831)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL29-A
33GA, XE
(Lk, Mk)		60S ribosomal protein L34-Apolymer12113673.22UniProt (P87262)
Pfam (PF01199)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL34-A
34HA, WE
(Ll, Ml)		60S ribosomal protein L33-Apolymer10712177.12UniProt (P05744)
Pfam (PF01247)		Saccharomyces cerevisiae (brewer's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
35IA, UE
(Lm, Mm)		60S ribosomal protein L32polymer13014809.42UniProt (P38061)
Pfam (PF01655)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL32
36JA, SE
(Ln, Mn)		60S ribosomal protein L31-Apolymer11312980.22UniProt (P0C2H8)
Pfam (PF01198)		Saccharomyces cerevisiae (brewer's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
37KA, QE
(Lo, Mo)		60S ribosomal protein L30polymer10511430.42UniProt (P14120)
Pfam (PF01248)		Saccharomyces cerevisiae (brewer's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
38LA, OE
(Lp, Mp)		60S ribosomal protein L29polymer596691.92UniProt (P05747)
Pfam (PF01779)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL29,YL43
39MA, ME
(Lq, Mq)		60S ribosomal protein L28polymer14916761.72UniProt (P02406)
Pfam (PF00828)		Saccharomyces cerevisiae (brewer's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
40KE, NA
(Lr, Mr)		60S ribosomal protein L27-Apolymer13615568.42UniProt (P0C2H6)
Pfam (PF01777)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein eL27-A
41IE, OA
(Ls, Ms)		60S ribosomal protein L26-Apolymer12714265.82UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)		Saccharomyces cerevisiae (brewer's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
42GE, PA
(Lt, Mt)		60S ribosomal protein L25polymer14215787.62UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
43FE, QA
(Lu, Mu)		60S ribosomal protein L24-Apolymer15517661.72UniProt (P04449)
Pfam (PF01246)		Saccharomyces cerevisiae (brewer's yeast)L30,Large ribosomal subunit protein eL24-A,RP29,YL21
44BE, RA
(Lv, Mv)		60S ribosomal protein L22-Apolymer12113711.42UniProt (P05749)
Pfam (PF01776)		Saccharomyces cerevisiae (brewer's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
45SA, XD
(Lw, Mw)		60S ribosomal protein L2-Apolymer25427463.62UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)		Saccharomyces cerevisiae (brewer's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
46AE, TA
(Lx, Mx)		60S ribosomal protein L3polymer38743850.82UniProt (P14126)
Pfam (PF00297)		Saccharomyces cerevisiae (brewer's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
47CE, UA
(Ly, My)		60S ribosomal protein L4-Apolymer36239159.12UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)		Saccharomyces cerevisiae (brewer's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
48EE, VA
(Lz, Mz)		60S ribosomal protein L5polymer29733764.82UniProt (P26321)
Pfam (PF17144)
Pfam (PF14204)		Saccharomyces cerevisiae (brewer's yeast)L1,L1a,Large ribosomal subunit protein uL18,Ribosomal 5S RNA-binding protein,YL3
49TC, WA
(S1, R1)		Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1)polymer1800579761.92GenBank (874346701)Saccharomyces cerevisiae (brewer's yeast)
50MC, XA
(SA, RA)		Small ribosomal subunit protein eS26Apolymer11913538.92UniProt (P39938)
Pfam (PF01283)		Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S26-A
51NC, YA
(SB, RB)		40S ribosomal protein S27-Apolymer828893.42UniProt (P35997)
Pfam (PF01667)		Saccharomyces cerevisiae (brewer's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
52ZA
(SC)		Small ribosomal subunit protein eS28Bpolymer677578.81UniProt (P0C0X0)
Pfam (PF01200)		Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S28-B,S33,YS27
53AB, PC
(SD, RD)		Small ribosomal subunit protein uS14Apolymer566675.72UniProt (P41057)
Pfam (PF00253)		Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S29-A,S36,YS29
54BB, QC
(SE, RE)		40S ribosomal protein S30-Apolymer637137.52UniProt (P0CX33)
Pfam (PF04758)		Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS30-A
55CB, RC
(SF, RF)		Ubiquitinpolymer15217254.22UniProt (P05759)
Pfam (PF00240)
Pfam (PF01599)		Saccharomyces cerevisiae (brewer's yeast)
56DB, SC
(SG, RG)		Guanine nucleotide-binding protein subunit beta-like proteinpolymer31934841.22UniProt (P38011)
Pfam (PF00400)		Saccharomyces cerevisiae (brewer's yeast)Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1
57EB, UC
(Sa, Ra)		40S ribosomal protein S0-Apolymer25228051.32UniProt (P32905)
Pfam (PF00318)		Saccharomyces cerevisiae (brewer's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
58FB, VC
(Sb, Rb)		40S ribosomal protein S1-Apolymer25528798.52UniProt (P33442)
Pfam (PF01015)		Saccharomyces cerevisiae (brewer's yeast)RP10A,Small ribosomal subunit protein eS1-A
59GB, WC
(Sc, Rc)		40S ribosomal protein S2polymer25427490.82UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)		Saccharomyces cerevisiae (brewer's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
60HB, XC
(Sd, Rd)		Small ribosomal subunit protein uS3polymer24026542.82UniProt (P05750)
Pfam (PF07650)
Pfam (PF00189)		Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S3,RP13,YS3
61IB, YC
(Se, Re)		40S ribosomal protein S4-Apolymer26129469.32UniProt (P0CX35)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)		Saccharomyces cerevisiae (brewer's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
62JB, ZC
(Sf, Rf)		40S ribosomal protein S5polymer22525072.62UniProt (P26783)
Pfam (PF00177)		Saccharomyces cerevisiae (brewer's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
63AD, KB
(Sg, Rg)		40S ribosomal protein S6-Apolymer23627054.52UniProt (P0CX37)
Pfam (PF01092)		Saccharomyces cerevisiae (brewer's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
64BD, LB
(Sh, Rh)		40S ribosomal protein S7-Apolymer19021658.22UniProt (P26786)
Pfam (PF01251)		Saccharomyces cerevisiae (brewer's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
65CD, MB
(Si, Ri)		40S ribosomal protein S8-Apolymer20022537.82UniProt (P0CX39)
Pfam (PF01201)		Saccharomyces cerevisiae (brewer's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
66DD, NB
(Sj, Rj)		40S ribosomal protein S9-Apolymer19722487.92UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)		Saccharomyces cerevisiae (brewer's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
67ED, OB
(Sk, Rk)		40S ribosomal protein S10-Apolymer10512757.42UniProt (Q08745)
Pfam (PF03501)		Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS10-A
68FD, PB
(Sl, Rl)		40S ribosomal protein S11-Apolymer15617785.92UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)		Saccharomyces cerevisiae (brewer's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
69GD, QB
(Sm, Rm)		40S ribosomal protein S12polymer14315488.62UniProt (P48589)
Pfam (PF01248)		Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein eS12
70HD, RB
(Sn, Rn)		40S ribosomal protein S13polymer15117059.92UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)		Saccharomyces cerevisiae (brewer's yeast)S27a,Small ribosomal subunit protein uS15,YS15
71SB
(So)		40S ribosomal protein S14-Apolymer13714562.71UniProt (P06367)
Pfam (PF00411)		Saccharomyces cerevisiae (brewer's yeast)RP59A,Small ribosomal subunit protein uS11-A
72JD, TB
(Sp, Rp)		40S ribosomal protein S15polymer14216031.92UniProt (Q01855)
Pfam (PF00203)		Saccharomyces cerevisiae (brewer's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
73KD, UB
(Sq, Rq)		40S ribosomal protein S16-Apolymer14315877.52UniProt (P0CX51)
Pfam (PF00380)		Saccharomyces cerevisiae (brewer's yeast)RP61R,Small ribosomal subunit protein uS9-A
74VB
(Sr)		40S ribosomal protein S17-Bpolymer13615835.41UniProt (P14127)
Pfam (PF00833)		Saccharomyces cerevisiae (brewer's yeast)RP51B,Small ribosomal subunit protein eS17-B
75EC, WB
(Ss, Rs)		40S ribosomal protein S18-Apolymer14617071.62UniProt (P0CX55)
Pfam (PF00416)		Saccharomyces cerevisiae (brewer's yeast)Small ribosomal subunit protein uS13-A
76FC, XB
(St, Rt)		40S ribosomal protein S19-Apolymer14415942.12UniProt (P07280)
Pfam (PF01090)		Saccharomyces cerevisiae (brewer's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
77GC, YB
(Su, Ru)		Small ribosomal subunit protein uS10polymer12113929.02UniProt (P38701)
Pfam (PF00338)		Saccharomyces cerevisiae (brewer's yeast)40S ribosomal protein S20
78HC, ZB
(Sv, Rv)		Small ribosomal subunit protein eS21Apolymer879758.82UniProt (P0C0V8)
Pfam (PF01249)		Saccharomyces cerevisiae (brewer's yeast)
79AC, IC
(Sw, Rw)		40S ribosomal protein S22-Apolymer13014650.12UniProt (P0C0W1)
Pfam (PF00410)		Saccharomyces cerevisiae (brewer's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
80BC, JC
(Sx, Rx)		40S ribosomal protein S23-Apolymer14516073.92UniProt (P0CX29)
Pfam (PF00164)		Saccharomyces cerevisiae (brewer's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
81CC, KC
(Sy, Ry)		40S ribosomal protein S24-Apolymer13515362.82UniProt (P0CX31)
Pfam (PF01282)		Saccharomyces cerevisiae (brewer's yeast)RP50,Small ribosomal subunit protein eS24-A
82DC, LC
(Sz, Rz)		40S ribosomal protein S25-Apolymer10812067.32UniProt (Q3E792)
Pfam (PF03297)		Saccharomyces cerevisiae (brewer's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
83OC
(RC)		40S ribosomal protein S28-Apolymer677605.81UniProt (Q3E7X9)
Pfam (PF01200)		Saccharomyces cerevisiae (brewer's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
84ID
(Ro)		40S ribosomal protein S14-Bpolymer13814675.81UniProt (P39516)
Pfam (PF00411)		Saccharomyces cerevisiae (brewer's yeast)RP59B,Small ribosomal subunit protein uS11-B
85LD
(Rr)		40S ribosomal protein S17-Apolymer13615820.41UniProt (P02407)
Pfam (PF00833)		Saccharomyces cerevisiae (brewer's yeast)RP51A,Small ribosomal subunit protein eS17-A
86MD
(MA)		60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)		Saccharomyces cerevisiae (brewer's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
87OD
(M1)		Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modificationspolymer33961098082.81GenBank (1262303)Saccharomyces cerevisiae (brewer's yeast)
88TD
(DQ)		tRNApolymer7724801.81Saccharomyces cerevisiae (brewer's yeast)
89VD
(MQ)		60S acidic ribosomal protein P0polymer31233749.11UniProt (P05317)
Pfam (PF00466)
Pfam (PF17777)
Pfam (PF00428)		Saccharomyces cerevisiae (brewer's yeast)A0,L10e,Large ribosomal subunit protein uL10
90YD
(MP)		60S ribosomal protein L12-Apolymer16517850.61UniProt (P0CX53)
Pfam (PF03946)
Pfam (PF00298)		Saccharomyces cerevisiae (brewer's yeast)L15,Large ribosomal subunit protein uL11-A,YL23
91HF
(DP)		tRNApolymer7624743.81GenBank (176419)Saccharomyces cerevisiae (brewer's yeast)
92AG, AH, AI, AJ, AK...
(S1, M1, M3, M2, MM...)		MAGNESIUM IONnon-polymer24.3295Chemie (MG)
93JF, KF, LF, MF, NF...
(Lb, Lc, Le, Lh, Lk...)		ZINC IONnon-polymer65.413Chemie (ZN)
94HQ, IQ, IR, JQ, KQ...
(M1, Mw, ME, Mm, Mk...)		POTASSIUM IONnon-polymer39.116Chemie (K)
95SQ, TQ, UQ
(M1)		SPERMIDINEnon-polymer145.23Chemie (SPD)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains164
Total formula weight6394450.0
Non-Polymers*Number of molecules327
Total formula weight9081.6
All*Total formula weight6403531.6
*Water molecules are not included.

238895

PDB entries from 2025-07-16

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