9EVS
Structure of the flowering plant mitoribosome with P-site tRNA
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B) | Small ribosomal subunit protein uS3m | polymer | 554 | 64731.3 | 1 | UniProt (A0A068BCX1) Pfam (PF00189) UniProt (by SIFTS) (A0A9F2H260) | Brassica oleracea var. botrytis | Ribosomal protein S3,mitochondrial |
| 2 | B (C) | uS4m | polymer | 362 | 43438.5 | 1 | Pfam (PF01479) UniProt (by SIFTS) (A0A8E8GUN5) | Brassica oleracea var. botrytis | |
| 3 | C (D) | uS5m | polymer | 501 | 58296.7 | 1 | Pfam (PF00333) Pfam (PF03719) UniProt (by SIFTS) (A0A0D3AS28) | Brassica oleracea var. botrytis | |
| 4 | D (E) | bS6m | polymer | 138 | 16011.4 | 1 | Pfam (PF01250) UniProt (by SIFTS) (A0A0D3CIR5) | Brassica oleracea var. botrytis | |
| 5 | E (F) | uS7m,Small ribosomal subunit protein uS7m | polymer | 157 | 17955.1 | 1 | UniProt (A0A068BEX5) Pfam (PF00177) UniProt (by SIFTS) (A0A8E8GUT3) | Brassica oleracea var. botrytis | Ribosomal protein S7,mitochondrial |
| 6 | F (G) | uS8m | polymer | 129 | 14874.1 | 1 | Pfam (PF00410) UniProt (by SIFTS) (A0A0D3A3G6) | Brassica oleracea var. botrytis | |
| 7 | G (H) | uS9m | polymer | 383 | 42328.4 | 1 | Pfam (PF00380) UniProt (by SIFTS) (A0A0D3DRJ4) | Brassica oleracea var. botrytis | |
| 8 | H (I) | uS10m | polymer | 228 | 25251.2 | 1 | Pfam (PF00338) UniProt (by SIFTS) (A0A0D3CHA1) | Brassica oleracea var. botrytis | |
| 9 | I (J) | uS11m | polymer | 304 | 33108.2 | 1 | Pfam (PF00411) UniProt (by SIFTS) (A0A0D3CF89) | Brassica oleracea var. botrytis | |
| 10 | J (K) | uS12m | polymer | 125 | 14283.8 | 1 | Pfam (PF00164) UniProt (by SIFTS) (P92532) | Brassica oleracea var. botrytis | |
| 11 | K (L) | uS13m | polymer | 154 | 17398.3 | 1 | Pfam (PF00416) UniProt (by SIFTS) (A0A0D3D1F0) | Brassica oleracea var. botrytis | |
| 12 | L (M) | uS14m | polymer | 155 | 17928.8 | 1 | Pfam (PF00253) UniProt (by SIFTS) (A0A3P6BZM6) | Brassica oleracea var. botrytis | |
| 13 | M (N) | uS15m | polymer | 414 | 47211.2 | 1 | Pfam (PF00312) UniProt (by SIFTS) (A0A0D3D1Z7) | Brassica oleracea var. botrytis | |
| 14 | N (O) | bS16m | polymer | 136 | 15330.8 | 1 | Pfam (PF00886) UniProt (by SIFTS) (A0A0D3ALM2) | Brassica oleracea var. botrytis | |
| 15 | O (P) | uS17m | polymer | 110 | 12090.0 | 1 | Pfam (PF00366) UniProt (by SIFTS) (A0A0D3CIP0) | Brassica oleracea var. botrytis | |
| 16 | P (Q) | bS18m | polymer | 237 | 27106.1 | 1 | Pfam (PF01084) UniProt (by SIFTS) (A0A3P6GSE6) | Brassica oleracea var. botrytis | |
| 17 | Q (R) | uS19m | polymer | 212 | 23675.2 | 1 | Pfam (PF00076) Pfam (PF00203) UniProt (by SIFTS) (A0A0D3BCZ0) | Brassica oleracea var. botrytis | |
| 18 | R (S) | bS21m | polymer | 100 | 11541.8 | 1 | Pfam (PF01165) UniProt (by SIFTS) (A0A0D3AW14) | Brassica oleracea var. botrytis | |
| 19 | S (T) | bTHXm | polymer | 94 | 10582.7 | 1 | Pfam (PF17067) UniProt (by SIFTS) (A0A3P6CQJ8) | Brassica oleracea var. botrytis | |
| 20 | T (U) | mS23 | polymer | 192 | 21903.5 | 1 | UniProt (by SIFTS) (A0A0D3D6U7) | Brassica oleracea var. botrytis | |
| 21 | U (V) | mS26 | polymer | 193 | 23093.6 | 1 | UniProt (by SIFTS) (A0A0D3DC57) | Brassica oleracea var. botrytis | |
| 22 | V (W) | mS29 | polymer | 483 | 54288.6 | 1 | Pfam (PF10236) UniProt (by SIFTS) (A0A0D3CAV8) | Brassica oleracea var. botrytis | |
| 23 | W (X) | mS31/mS46 | polymer | 496 | 53476.2 | 1 | UniProt (by SIFTS) (A0A0D3CQR2) | Brassica oleracea var. botrytis | |
| 24 | X (Y) | mS33 | polymer | 102 | 11631.6 | 1 | Pfam (PF08293) UniProt (by SIFTS) (A0A0D2ZQ12) | Brassica oleracea var. botrytis | |
| 25 | Y (Z) | mS34 | polymer | 153 | 16650.2 | 1 | Pfam (PF16053) UniProt (by SIFTS) (A0A0D3AL50) | Brassica oleracea var. botrytis | |
| 26 | Z (1) | 26S rRNA | polymer | 2922 | 944322.6 | 1 | Brassica oleracea var. botrytis | ||
| 27 | AA (3) | 5S rRNA | polymer | 118 | 37992.6 | 1 | Brassica oleracea var. botrytis | ||
| 28 | BA (1B) | uL2m C-ter | polymer | 220 | 23561.8 | 1 | Pfam (PF03947) UniProt (by SIFTS) (A0A0D3B6N5) | Brassica oleracea var. oleracea | |
| 29 | CA (1C) | Large ribosomal subunit protein uL2mz, N-terminal part | polymer | 327 | 35903.9 | 1 | UniProt (P93311) Pfam (PF00181) UniProt (by SIFTS) (A0A8E8L9Z5) | Arabidopsis thaliana (thale cress) | 60S ribosomal protein L2,mitochondrial |
| 30 | DA (1D) | uL3m | polymer | 319 | 35071.5 | 1 | Pfam (PF00297) UniProt (by SIFTS) (A0A0D3ACV4) | Brassica oleracea var. botrytis | |
| 31 | EA (1E) | uL4m | polymer | 297 | 33050.2 | 1 | Pfam (PF00573) UniProt (by SIFTS) (A0A0D2ZRI2) | Brassica oleracea var. botrytis | |
| 32 | FA (1F) | uL5m | polymer | 185 | 21258.3 | 1 | UniProt (by SIFTS) (A0A8E8LAA9) | Brassica oleracea var. botrytis | |
| 33 | GA (1G) | uL6m | polymer | 102 | 11570.8 | 1 | Pfam (PF00347) UniProt (by SIFTS) (A0A0D3D316) | Brassica oleracea var. botrytis | |
| 34 | HA (1H) | bL9m | polymer | 219 | 25074.3 | 1 | Pfam (PF01281) UniProt (by SIFTS) (A0A0D3EAI8) | Brassica oleracea var. botrytis | |
| 35 | IA (1I) | uL10m | polymer | 170 | 18917.9 | 1 | Pfam (PF00466) UniProt (by SIFTS) (A0A0D3AE97) | Brassica oleracea var. botrytis | |
| 36 | JA (1J) | uL11m | polymer | 156 | 17035.0 | 1 | Pfam (PF03946) Pfam (PF00298) UniProt (by SIFTS) (A0A0D3DHU3) | Brassica oleracea var. botrytis | |
| 37 | KA (1K) | uL13m | polymer | 204 | 23166.9 | 1 | Pfam (PF00572) UniProt (by SIFTS) (A0A0D3B978) | Brassica oleracea var. botrytis | |
| 38 | LA (1L) | uL14m | polymer | 176 | 18926.3 | 1 | Pfam (PF00238) UniProt (by SIFTS) (A0A0D3D9E7) | Brassica oleracea var. botrytis | |
| 39 | MA (1M) | uL15m | polymer | 281 | 31222.6 | 1 | Pfam (PF00828) UniProt (by SIFTS) (A0A0D3BF13) | Brassica oleracea var. botrytis | |
| 40 | NA (1N) | uL16m | polymer | 179 | 20186.9 | 1 | Pfam (PF00252) UniProt (by SIFTS) (G4XYG6) | Brassica oleracea var. botrytis | |
| 41 | OA (1O) | bL17m | polymer | 160 | 18612.5 | 1 | Pfam (PF01196) UniProt (by SIFTS) (A0A3P6DBK6) | Brassica oleracea var. botrytis | |
| 42 | PA (1P) | uL18m | polymer | 114 | 12654.1 | 1 | Pfam (PF00861) UniProt (by SIFTS) (A0A0D3DCH7) | Brassica oleracea var. botrytis | |
| 43 | QA (1Q) | bL19m | polymer | 233 | 26348.5 | 1 | Pfam (PF01245) UniProt (by SIFTS) (A0A0D3B0P2) | Brassica oleracea var. botrytis | |
| 44 | RA (1R) | bL20m | polymer | 126 | 14749.1 | 1 | Pfam (PF00453) UniProt (by SIFTS) (A0A3P6FUQ5) | Brassica oleracea var. botrytis | |
| 45 | SA (1S) | bL21m | polymer | 270 | 30955.7 | 1 | Pfam (PF00829) UniProt (by SIFTS) (A0A0D3BM42) | Brassica oleracea var. botrytis | |
| 46 | TA (1T) | uL22m | polymer | 264 | 29793.8 | 1 | Pfam (PF00237) UniProt (by SIFTS) (A0A0D3BFS0) | Brassica oleracea var. botrytis | |
| 47 | UA (1U) | uL23m | polymer | 180 | 19963.2 | 1 | Pfam (PF00276) UniProt (by SIFTS) (A0A3P6FL36) | Brassica oleracea var. botrytis | |
| 48 | VA (1V) | uL24m | polymer | 159 | 17547.4 | 1 | Pfam (PF00467) Pfam (PF17136) UniProt (by SIFTS) (A0A0D3E1K4) | Brassica oleracea var. botrytis | |
| 49 | WA (1W) | bL25-2m | polymer | 249 | 27376.7 | 1 | Pfam (PF14693) UniProt (by SIFTS) (A0A0D3D8C0) | Brassica oleracea var. botrytis | |
| 50 | XA (1X) | bL25m | polymer | 271 | 29945.8 | 1 | Pfam (PF01386) Pfam (PF14693) UniProt (by SIFTS) (A0A0D3BK40) | Brassica oleracea var. botrytis | |
| 51 | YA (1Y) | bL27m | polymer | 156 | 17095.6 | 1 | Pfam (PF01016) UniProt (by SIFTS) (A0A0D3B184) | Brassica oleracea var. botrytis | |
| 52 | ZA (1Z) | bL28m | polymer | 212 | 24112.6 | 1 | Pfam (PF00830) UniProt (by SIFTS) (A0A0D3A2V4) | Brassica oleracea var. botrytis | |
| 53 | AB (1a) | uL29m | polymer | 144 | 16970.8 | 1 | Pfam (PF06984) UniProt (by SIFTS) (A0A0D3C8D7) | Brassica oleracea var. botrytis | |
| 54 | BB (1b) | uL30m | polymer | 109 | 12347.5 | 1 | Pfam (PF00327) UniProt (by SIFTS) (A0A0D3EB87) | Brassica oleracea var. botrytis | |
| 55 | CB (1c) | bL31m | polymer | 135 | 15785.3 | 1 | UniProt (by SIFTS) (A0A3P6EA05) | Brassica oleracea var. botrytis | |
| 56 | DB (1d) | bL32m | polymer | 139 | 15228.8 | 1 | Pfam (PF01783) UniProt (by SIFTS) (A0A0D3D6U6) | Brassica oleracea var. botrytis | |
| 57 | EB (1e) | bL33m | polymer | 63 | 7446.9 | 1 | Pfam (PF00471) UniProt (by SIFTS) (A0A0D3B1V6) | Brassica oleracea var. botrytis | |
| 58 | FB (1f) | bL34m | polymer | 146 | 16532.2 | 1 | Pfam (PF00468) UniProt (by SIFTS) (A0A0D3CKG1) | Brassica oleracea var. botrytis | |
| 59 | GB (1g) | bL35m | polymer | 162 | 18991.4 | 1 | Pfam (PF01632) UniProt (by SIFTS) (A0A0D3AUD0) | Brassica oleracea var. botrytis | |
| 60 | HB (1h) | bL36m | polymer | 103 | 11452.4 | 1 | Pfam (PF00444) UniProt (by SIFTS) (A0A0D3B225) | Brassica oleracea var. botrytis | |
| 61 | IB (1i) | mL40 | polymer | 247 | 27264.8 | 1 | UniProt (by SIFTS) (A0A3P6DV95) | Brassica oleracea var. botrytis | |
| 62 | JB (1j) | mL41 | polymer | 90 | 10075.8 | 1 | Pfam (PF09809) UniProt (by SIFTS) (A0A0D3B8D2) | Brassica oleracea var. botrytis | |
| 63 | KB (1k) | mL43 | polymer | 119 | 13679.9 | 1 | Pfam (PF05047) UniProt (by SIFTS) (A0A0D3DUE5) | Brassica oleracea var. botrytis | |
| 64 | LB (1l) | mL46 | polymer | 233 | 27178.3 | 1 | UniProt (by SIFTS) (A0A0D3C6J2) | Brassica oleracea var. botrytis | |
| 65 | MB (1m) | mL53 | polymer | 128 | 14567.6 | 1 | Pfam (PF10780) UniProt (by SIFTS) (A0A0D2ZPT5) | Brassica oleracea var. botrytis | |
| 66 | NB (1o) | mL54 | polymer | 125 | 13767.9 | 1 | Pfam (PF08561) UniProt (by SIFTS) (A0A0D3B980) | Brassica oleracea var. botrytis | |
| 67 | OB (1p) | mL59/mL64 | polymer | 130 | 15415.2 | 1 | UniProt (by SIFTS) (A0A0D3A516) | Brassica oleracea var. botrytis | |
| 68 | PB (1q) | mL60 | polymer | 79 | 8680.0 | 1 | UniProt (by SIFTS) (A0A0D3BIE3) | Brassica oleracea var. botrytis | |
| 69 | QB (1r) | mL80 | polymer | 167 | 18391.5 | 1 | UniProt (by SIFTS) (A0A0D3D0H7) | Brassica oleracea var. botrytis | |
| 70 | RB (1s) | mL87 | polymer | 181 | 20712.5 | 1 | UniProt (by SIFTS) (A0A0D3DDW7) | Brassica oleracea var. botrytis | |
| 71 | SB (1t) | mL101 (rPPR4) | polymer | 491 | 55947.3 | 1 | Pfam (PF01535) Pfam (PF13041) UniProt (by SIFTS) (A0A0D3E593) | Brassica oleracea var. botrytis | |
| 72 | TB (1u) | mL102 (rPPR5) | polymer | 757 | 85829.0 | 1 | Pfam (PF01535) Pfam (PF13041) UniProt (by SIFTS) (A0A0D3B5D6) | Brassica oleracea var. botrytis | |
| 73 | UB (1v) | mL104 (rPPR9) | polymer | 521 | 59234.5 | 1 | Pfam (PF13041) Pfam (PF13812) UniProt (by SIFTS) (A0A0D3DDH3) | Brassica oleracea var. botrytis | |
| 74 | VB (1x) | Nascent peptide | polymer | 4 | 316.4 | 1 | Brassica oleracea var. botrytis | ||
| 75 | WB (5) | tRNA | polymer | 76 | 24541.7 | 1 | Brassica oleracea var. botrytis | ||
| 76 | XB (2) | 18S rRNA | polymer | 1591 | 514869.7 | 1 | Brassica oleracea var. botrytis | ||
| 77 | YB (6) | mRNA | polymer | 6 | 1907.2 | 1 | Brassica oleracea var. botrytis | ||
| 78 | ZB (a) | mS35 | polymer | 424 | 48577.3 | 1 | Pfam (PF10213) UniProt (by SIFTS) (A0A0D3CJ03) | Brassica oleracea var. botrytis | |
| 79 | AC (b) | mS37 | polymer | 80 | 9227.9 | 1 | Pfam (PF16860) UniProt (by SIFTS) (Q1G3Z3) | Brassica oleracea var. botrytis | |
| 80 | BC (c) | mS38 | polymer | 128 | 14562.2 | 1 | Pfam (PF08213) UniProt (by SIFTS) (A0A0D3DRC3) | Brassica oleracea var. botrytis | |
| 81 | CC (d) | mS41 | polymer | 110 | 12499.0 | 1 | Pfam (PF09597) UniProt (by SIFTS) (A0A0D3DCJ8) | Brassica oleracea var. botrytis | |
| 82 | DC (e) | mS45 | polymer | 383 | 44013.5 | 1 | UniProt (A0A0D3BFU2) Pfam (PF12298) | Brassica oleracea var. botrytis | |
| 83 | EC (f) | mS47 | polymer | 410 | 45518.7 | 1 | Pfam (PF16113) UniProt (by SIFTS) (A0A0D3BLX1) | Brassica oleracea var. botrytis | |
| 84 | FC (h) | mS83 (rPPR10) | polymer | 384 | 43367.8 | 1 | UniProt (by SIFTS) (A0A0D3CHJ4) | Brassica oleracea var. botrytis | |
| 85 | GC (i) | mS77 (NFD5) | polymer | 725 | 82648.8 | 1 | Pfam (PF17177) UniProt (by SIFTS) (A0A0D3CBJ8) | Brassica oleracea var. botrytis | |
| 86 | HC (j) | mS76 (rPPR1) | polymer | 408 | 45681.9 | 1 | Pfam (PF13041) Pfam (PF01535) UniProt (by SIFTS) (A0A0D3AAV3) | Brassica oleracea var. botrytis | |
| 87 | IC (k) | mS86 | polymer | 155 | 15968.0 | 1 | Pfam (PF00076) UniProt (by SIFTS) (A0A3P6FEP3) | Brassica oleracea var. botrytis | |
| 88 | JC (A) | uS2m | polymer | 212 | 23743.5 | 1 | Pfam (PF00318) UniProt (by SIFTS) (A0A0D3CN01) | Brassica oleracea var. botrytis | |
| 89 | AD, AF, AH, AI, AJ... (1, 2, 3, T, W...) | MAGNESIUM ION | non-polymer | 24.3 | 357 | Chemie (MG) | |||
| 90 | LC (W) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 91 | NC (1) | CHLORAMPHENICOL | non-polymer | 323.1 | 1 | Chemie (CLM) | |||
| 92 | AE, AG, BG, BT, CE... (1, 2, 1B, 1E) | POTASSIUM ION | non-polymer | 39.1 | 74 | Chemie (K) | |||
| 93 | PO, QO (1d, 1h) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
B: 1 - 556 (UniProt: A0A068BCX1)
F: -8 - 1 (PDB: 9EVS)
F: 2 - 148 (UniProt: A0A068BEX5)
1C: 1 - 327 (UniProt: P93311)
| PDB | External Database | Details |
|---|---|---|
| Trp 22 | Arg 22 | conflict |
| Leu 172 | Ser 170 | conflict |
| Lys 202 | Arg 200 | conflict |
| Leu 296 | Ser 294 | conflict |
| Cys 512 | Arg 510 | conflict |
| Val 524 | Ala 522 | conflict |
| Leu 533 | Ser 531 | conflict |
F: 2 - 148 (UniProt: A0A068BEX5)
1C: 1 - 327 (UniProt: P93311)
| PDB | External Database | Details |
|---|---|---|
| Lys 87 | Glu 87 | conflict |
| Leu 89 | Phe 89 | conflict |
| Tyr 147 | Ser 147 | conflict |
| Ser 155 | Gly 155 | conflict |
| Asp 190 | Gly 190 | conflict |
| Pro 195 | Ala 195 | conflict |
| Val 199 | Ala 199 | conflict |
| Ser 200 | Lys 200 | conflict |
| Thr 201 | Pro 201 | conflict |
| Tyr 221 | Cys 221 | conflict |
| Trp 226 | Gly 226 | conflict |
| Asn 238 | Lys 238 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 88 |
| Total formula weight | 3673547.5 | |
| Non-Polymers* | Number of molecules | 435 |
| Total formula weight | 12531.3 | |
| All* | Total formula weight | 3686078.8 |
