9ERL
Cryo-EM structure of sodium pumping Rnf complex from Acetobacterium woodii in apo state
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit A | polymer | 191 | 20384.4 | 1 | UniProt (H6LC28) Pfam (PF02508) | Acetobacterium woodii DSM 1030 | Rnf electron transport complex subunit A |
| 2 | B (B) | Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit B | polymer | 333 | 34762.8 | 1 | UniProt (H6LC27) Pfam (PF04060) Pfam (PF00037) Pfam (PF12838) | Acetobacterium woodii DSM 1030 | Rnf electron transport complex subunit B |
| 3 | C (C) | Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit C | polymer | 443 | 47177.8 | 1 | UniProt (H6LC32) Pfam (PF12838) Pfam (PF13375) Pfam (PF01512) Pfam (PF10531) | Acetobacterium woodii DSM 1030 | Rnf electron transport complex subunit C |
| 4 | D (D) | Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit D | polymer | 318 | 33762.0 | 1 | UniProt (H6LC31) Pfam (PF03116) | Acetobacterium woodii DSM 1030 | Rnf electron transport complex subunit D |
| 5 | E (E) | Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit E | polymer | 196 | 20544.8 | 1 | UniProt (H6LC29) Pfam (PF02508) | Acetobacterium woodii DSM 1030 | Rnf electron transport complex subunit E |
| 6 | F (G) | Na(+)-translocating ferredoxin:NAD(+) oxidoreductase complex subunit G | polymer | 207 | 21850.9 | 1 | UniProt (H6LC30) Pfam (PF04205) | Acetobacterium woodii DSM 1030 | Rnf electron transport complex subunit G |
| 7 | G, H, W (A, E) | SODIUM ION | non-polymer | 23.0 | 3 | Chemie (NA) PubChem (923) | |||
| 8 | I (A) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 1 | Chemie (FES) | |||
| 9 | J, K, L, M, N... (B, C) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 10 | Chemie (SF4) | |||
| 10 | T, U, X (C, D, G) | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 3 | Chemie (FMN) PubChem (23585816) PubChem (51435500) PubChem (51435503) PubChem (15559251) PubChem (710) PubChem (8965) PubChem (643976) PubChem (5702760) PubChem (7048779) PubChem (7048781) | |||
| 11 | V (D) | RIBOFLAVIN | non-polymer | 376.4 | 1 | Chemie (RBF) PubChem (176586505) PubChem (1561682) PubChem (46782882) PubChem (493570) PubChem (6328150) PubChem (59733797) PubChem (89260495) PubChem (1072) PubChem (6759) PubChem (193301) PubChem (7048775) PubChem (7048776) PubChem (12304941) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 178482.7 | |
| Non-Polymers* | Number of molecules | 18 |
| Total formula weight | 5506.6 | |
| All* | Total formula weight | 183989.3 |
