9EOZ
Human OGG1 bound to a nucleosome core particle with 8-oxodGuo lesion at SHL6.0
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | N-glycosylase/DNA lyase | polymer | 356 | 40092.3 | 1 | UniProt (O15527) Pfam (PF07934) Pfam (PF00730) | Homo sapiens (human) | |
| 2 | B, D (B, F) | Histone H4 | polymer | 102 | 11263.2 | 2 | UniProt (P62805) Pfam (PF15511) | Homo sapiens (human) | |
| 3 | C, G (E, K) | Histone H3.3 | polymer | 135 | 15229.8 | 2 | UniProt (P84243) Pfam (PF00125) | Homo sapiens (human) | |
| 4 | E, H (G, L) | Histone H2A type 1-C | polymer | 129 | 14004.3 | 2 | UniProt (Q93077) Pfam (PF00125) Pfam (PF16211) | Homo sapiens (human) | H2A-clustered histone 6,Histone H2A/l |
| 5 | F, I (H, M) | Histone H2B type 1-C/E/F/G/I | polymer | 125 | 13806.0 | 2 | UniProt (P62807) Pfam (PF00125) | Homo sapiens (human) | Histone H2B.1 A,Histone H2B.a,H2B/a,Histone H2B.g,H2B/g,Histone H2B.h,H2B/h,Histone H2B.k,H2B/k,Histone H2B.l,H2B/l |
| 6 | J (Y) | Widom 601 DNA (145-MER) | polymer | 145 | 44520.4 | 1 | synthetic construct | ||
| 7 | K (Z) | Widom 601 DNA (145-MER) | polymer | 145 | 45007.7 | 1 | synthetic construct |
Sequence modifications
A: 2 - 345 (UniProt: O15527)
| PDB | External Database | Details |
|---|---|---|
| Gly -10 | - | expression tag |
| Ser -9 | - | expression tag |
| Ser -8 | - | expression tag |
| His -7 | - | expression tag |
| His -6 | - | expression tag |
| His -5 | - | expression tag |
| His -4 | - | expression tag |
| His -3 | - | expression tag |
| His -2 | - | expression tag |
| Ser -1 | - | expression tag |
| Gln 0 | - | expression tag |
| Asp 1 | - | expression tag |
| Gln 249 | Lys 249 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 238227.1 | |
| All* | Total formula weight | 238227.1 |
