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9EMJ

SARS-CoV-2 methyltransferase nsp10-16 in complex with Toyocamycin and m7GpppA (Cap0-analog)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
2'-O-methyltransferase nsp16polymer30333912.81UniProt (P0DTD1)
Pfam (PF06460)
Severe acute respiratory syndrome coronavirus 2Non-structural protein 16,nsp16
2B
(B)
Non-structural protein 10polymer14014860.01UniProt (P0DTD1)
Pfam (PF09401)
Severe acute respiratory syndrome coronavirus 2nsp10,Growth factor-like peptide,GFL
3C
(A)
4-amino-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidine-5-carbonitrilenon-polymer291.31Chemie (TO1)
4D
(A)
P1-7-METHYLGUANOSINE-P3-ADENOSINE-5',5'-TRIPHOSPHATEnon-polymer787.41Chemie (GTA)
5E
(A)
7-METHYL-GUANOSINE-5'-TRIPHOSPHATEnon-polymer538.21Chemie (MGP)
6F, I
(B)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
7G, H
(B)
ZINC IONnon-polymer65.42Chemie (ZN)
8J, K
(A, B)
waterwater18.0365Chemie (HOH)
Sequence modifications
A: 6799 - 7096 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser 6797-expression tag
Asn 6798-expression tag
Glu 7097-expression tag
Asn 7098-expression tag
Leu 7099-expression tag
B: 4254 - 4392 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Gly 4253-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight48772.8
Non-Polymers*Number of molecules7
Total formula weight1871.9
All*Total formula weight50644.7
*Water molecules are not included.

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PDB entries from 2025-06-11

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