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9ELR

env2 cobalamin riboswitch aptamer domain in complex with ethynyl-2-naphthalenepropiolate-cobalamin

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
RNA (76-MER)polymer7624731.72marine metagenome
2C, P
(A, B)
naphthalen-2-yl 3-[(3~{R},4~{R},5~{R},9~{S},14~{S},15~{S},19~{S},20~{S},21~{R})-4,15,20-tris(2-azanyl-2-oxidanylidene-ethyl)-9,14,19-tris(3-azanyl-3-oxidanylidene-propyl)-5-[3-[[(2~{R})-2-[[(2~{R},3~{S},4~{R},5~{S})-5-(5,6-dimethylbenzimidazol-1-yl)-2-(hydroxymethyl)-4-oxidanyl-oxolan-3-yl]oxy-oxidanyl-phosphoryl]oxypropyl]amino]-3-oxidanylidene-propyl]-5,7,10,10,15,17,20,21-octamethyl-22-aza-2,23,24-triazonia-1$l^{5}-cobaltaoctacyclo[11.9.1.1^{1,8}.0^{2,6}.0^{3,21}.0^{16,23}.0^{18,22}.0^{11,24}]tetracosa-2(6),7,11(24),12,16(23),17-hexaen-1-yl]prop-2-ynoatenon-polymer1525.52Chemie (A1BI7)
3D, Q
(A, B)
N-methylpropane-1,3-diaminenon-polymer88.22Chemie (N3D)
4E, R
(A, B)
2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOLnon-polymer122.12Chemie (TRS)
5AA, BA, F, G, H...
(B, A)
MAGNESIUM IONnon-polymer24.319Chemie (MG)
6CA, O
(B, A)
POTASSIUM IONnon-polymer39.12Chemie (K)
7DA, EA
(A, B)
waterwater18.0416Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight49463.4
Non-Polymers*Number of molecules27
Total formula weight4011.7
All*Total formula weight53475.1
*Water molecules are not included.

249697

PDB entries from 2026-02-25

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