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9EFC

Crystal structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with TO-588

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Hdac6 proteinpolymer35839812.12UniProt (A7YT55)
Pfam (PF00850)
UniProt (by SIFTS) (F8W4B7)
Danio rerio (zebrafish)Histone Deacetylase 6
2C, G
(A, B)
N-hydroxy-4-({(methanesulfonyl)[(pyridin-3-yl)methyl]amino}methyl)benzamidenon-polymer335.42Chemie (A1BHY)
3D, H
(A, B)
ZINC IONnon-polymer65.42Chemie (ZN)
4E, F, I, J
(A, B)
POTASSIUM IONnon-polymer39.14Chemie (K)
5K, L
(A, B)
waterwater18.0783Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight79624.1
Non-Polymers*Number of molecules8
Total formula weight958.0
All*Total formula weight80582.1
*Water molecules are not included.

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PDB entries from 2025-06-18

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