9DTX
Crystal structure of PRT3789 in complex with the bromodomain of human BRG1 (SMARCA4) and pVHL:ElonginC:ElonginB
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Elongin-B | polymer | 104 | 11748.4 | 1 | UniProt (Q15370) Pfam (PF00240) | Homo sapiens (human) | EloB,Elongin 18 kDa subunit,RNA polymerase II transcription factor SIII subunit B,SIII p18,Transcription elongation factor B polypeptide 2 |
| 2 | B (B) | Elongin-C | polymer | 96 | 10843.4 | 1 | UniProt (Q15369) Pfam (PF03931) | Homo sapiens (human) | EloC, Elongin 15 kDa subunit, RNA polymerase II transcription factor SIII subunit C, SIII p15, Transcription elongation factor B polypeptide 1 |
| 3 | C (C) | von Hippel-Lindau disease tumor suppressor | polymer | 161 | 18615.2 | 1 | UniProt (P40337) Pfam (PF01847) Pfam (PF17211) | Homo sapiens (human) | Protein G7,pVHL |
| 4 | D (D) | Transcription activator BRG1 | polymer | 138 | 16211.6 | 1 | UniProt (P51532) Pfam (PF00439) | Homo sapiens (human) | ATP-dependent helicase SMARCA4,BRG1-associated factor 190A,BAF190A,Mitotic growth and transcription activator,Protein BRG-1,Protein brahma homolog 1,SNF2-beta,SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 4 |
| 5 | E (C) | (4R)-4-hydroxy-1-[(2R)-2-(3-{[(2S)-1-{(3R)-3-[(2M,6aS,11S)-2-(2-hydroxyphenyl)-5,6,6a,7,9,10-hexahydro-8H-pyrazino[1',2':4,5]pyrazino[2,3-c]pyridazin-8-yl]pyrrolidin-1-yl}propan-2-yl]oxy}-1,2-oxazol-5-yl)-3-methylbutanoyl]-N-{(1S)-1-[4-(4-methyl-1,3-thiazol-5-yl)phenyl]ethyl}-L-prolinamide | non-polymer | 891.1 | 1 | Chemie (A1BB4) | |||
| 6 | F (C) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) | |||
| 7 | G (C) | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
| 8 | H (C) | CHLORIDE ION | non-polymer | 35.5 | 1 | Chemie (CL) | |||
| 9 | I, J, K, L (A, B, C, D) | water | water | 18.0 | 326 | Chemie (HOH) |
Sequence modifications
C: 54 - 213 (UniProt: P40337)
D: 1448 - 1569 (UniProt: P51532)
| PDB | External Database | Details |
|---|---|---|
| Gly 53 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 1432 | - | expression tag |
| Gly 1433 | - | expression tag |
| Leu 1434 | - | expression tag |
| Asn 1435 | - | expression tag |
| Asp 1436 | - | expression tag |
| Ile 1437 | - | expression tag |
| Phe 1438 | - | expression tag |
| Glu 1439 | - | expression tag |
| Ala 1440 | - | expression tag |
| Gln 1441 | - | expression tag |
| Lys 1442 | - | expression tag |
| Ile 1443 | - | expression tag |
| Glu 1444 | - | expression tag |
| Trp 1445 | - | expression tag |
| His 1446 | - | expression tag |
| Glu 1447 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 57418.6 | |
| Non-Polymers* | Number of molecules | 4 |
| Total formula weight | 1080.7 | |
| All* | Total formula weight | 58499.3 |
