9DQZ
Structure of western equine encephalitis virus McMillan VLP in complex with human VLDLR
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D, G, M (D, G, J, A) | Structural polyprotein | polymer | 438 | 47185.6 | 4 | UniProt (Q1W678) UniProt (by SIFTS) (P13897) | Western equine encephalitis virus | p130 |
| 2 | B, E, H, N (E, H, K, B) | Structural polyprotein | polymer | 409 | 45550.9 | 4 | UniProt (C7EPF2) UniProt (by SIFTS) (P13897) | Western equine encephalitis virus | p130 |
| 3 | C, F, I, O (F, I, L, C) | Capsid protein | polymer | 158 | 17320.7 | 4 | UniProt (P13897) | Western equine encephalitis virus | Coat protein,C |
| 4 | J, K, L, P (M, N, O, P) | Very low-density lipoprotein receptor | polymer | 78 | 8654.4 | 4 | UniProt (P98155) Pfam (PF00057) | Homo sapiens (human) | VLDL receptor,VLDL-R |
| 5 | AA, BA, IA, JA, KA... (K, A, B, D, E...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 16 | Chemie (NAG) | |||
| 6 | CA, DA, EA, FA, GA... (M, N, O, P) | CALCIUM ION | non-polymer | 40.1 | 8 | Chemie (CA) PubChem (271) |
Sequence modifications
D, G, J, A: 1 - 438 (UniProt: Q1W678)
| PDB | External Database | Details |
|---|---|---|
| Thr 146 | Ala 943 | conflict |
| Ser 300 | Gly 1097 | conflict |
| Glu 341 | Gly 1138 | conflict |
| Thr 349 | Ile 1146 | conflict |
| Ile 388 | Thr 1185 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 16 |
| Total formula weight | 474846.3 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 3860.0 | |
| All* | Total formula weight | 478706.2 |
