9DIK
Crystal structure of Plasmodium falciparum dihydroorotate dehydrogenase bound with Inhibitor DSM681 (N-cyclopropyl-1,4-dimethyl-5-((6-(trifluoromethyl)pyridin-3-yl)methyl)-1H-pyrazole-3-carboxamide)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (A, B) | Dihydroorotate dehydrogenase (quinone), mitochondrial | polymer | 401 | 45385.9 | 2 | UniProt (Q08210) Pfam (PF01180) | Plasmodium falciparum 3D7 | DHOdehase,Dihydroorotate oxidase |
| 2 | C, F (A, B) | N-cyclopropyl-1,4-dimethyl-5-{[6-(trifluoromethyl)pyridin-3-yl]methyl}-1H-pyrazole-3-carboxamide | non-polymer | 338.3 | 2 | Chemie (A1A52) | |||
| 3 | D, G (A, B) | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 2 | Chemie (FMN) | |||
| 4 | E, H (A, B) | 6-[bis(oxidanyl)methyl]-5~{H}-pyrimidine-2,4-dione | non-polymer | 158.1 | 2 | Chemie (OG6) | |||
| 5 | I, J (B) | SODIUM ION | non-polymer | 23.0 | 2 | Chemie (NA) | |||
| 6 | K, L (A, B) | water | water | 18.0 | 255 | Chemie (HOH) |
Sequence modifications
A, B: 158 - 569 (UniProt: Q08210)
| PDB | External Database | Details |
|---|---|---|
| Met 139 | - | initiating methionine |
| Gly 140 | - | expression tag |
| His 141 | - | expression tag |
| His 142 | - | expression tag |
| His 143 | - | expression tag |
| His 144 | - | expression tag |
| His 145 | - | expression tag |
| His 146 | - | expression tag |
| Ala 147 | - | expression tag |
| Glu 148 | - | expression tag |
| Asn 149 | - | expression tag |
| Leu 150 | - | expression tag |
| Tyr 151 | - | expression tag |
| Phe 152 | - | expression tag |
| Gln 153 | - | expression tag |
| Gly 154 | - | expression tag |
| Ala 155 | - | expression tag |
| Asp 156 | - | expression tag |
| Pro 157 | - | expression tag |
| - | Ser 384 | deletion |
| - | Thr 385 | deletion |
| - | Tyr 386 | deletion |
| - | Asn 387 | deletion |
| - | Glu 388 | deletion |
| - | Asp 389 | deletion |
| - | Asn 390 | deletion |
| - | Lys 391 | deletion |
| - | Ile 392 | deletion |
| - | Val 393 | deletion |
| - | Glu 394 | deletion |
| - | Lys 395 | deletion |
| - | Lys 396 | deletion |
| - | Asn 397 | deletion |
| - | Asn 398 | deletion |
| - | Phe 399 | deletion |
| - | Asn 400 | deletion |
| - | Lys 401 | deletion |
| - | Asn 402 | deletion |
| - | Asn 403 | deletion |
| - | Ser 404 | deletion |
| - | His 405 | deletion |
| - | Met 406 | deletion |
| - | Met 407 | deletion |
| - | Lys 408 | deletion |
| - | Asp 409 | deletion |
| - | Ala 410 | deletion |
| - | Lys 411 | deletion |
| - | Asp 412 | deletion |
| - | Asn 413 | deletion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 90771.8 | |
| Non-Polymers* | Number of molecules | 8 |
| Total formula weight | 1951.5 | |
| All* | Total formula weight | 92723.4 |
