9DF0
PDCoV S RBD bound to PD41 Fab (local refinement)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike glycoprotein | polymer | 1166 | 128934.8 | 1 | UniProt (A0A6M5ICE2) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) UniProt (by SIFTS) (A0A140ESD0) | Porcine deltacoronavirus | |
| 2 | B (H) | PD41 Fab variable heavy-chain | polymer | 118 | 13020.5 | 1 | Mus musculus (mouse) | ||
| 3 | C (L) | PD41 Fab variable light-chain | polymer | 111 | 11603.6 | 1 | Mus musculus (mouse) | ||
| 4 | D (B) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 5 | E (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
A: 2 - 1098 (UniProt: A0A6M5ICE2)
| PDB | External Database | Details |
|---|---|---|
| Gly 1099 | - | expression tag |
| Ser 1100 | - | expression tag |
| Gly 1101 | - | expression tag |
| Tyr 1102 | - | expression tag |
| Ile 1103 | - | expression tag |
| Pro 1104 | - | expression tag |
| Glu 1105 | - | expression tag |
| Ala 1106 | - | expression tag |
| Pro 1107 | - | expression tag |
| Arg 1108 | - | expression tag |
| Asp 1109 | - | expression tag |
| Gly 1110 | - | expression tag |
| Gln 1111 | - | expression tag |
| Ala 1112 | - | expression tag |
| Tyr 1113 | - | expression tag |
| Val 1114 | - | expression tag |
| Arg 1115 | - | expression tag |
| Lys 1116 | - | expression tag |
| Asp 1117 | - | expression tag |
| Gly 1118 | - | expression tag |
| Glu 1119 | - | expression tag |
| Trp 1120 | - | expression tag |
| Val 1121 | - | expression tag |
| Leu 1122 | - | expression tag |
| Leu 1123 | - | expression tag |
| Ser 1124 | - | expression tag |
| Thr 1125 | - | expression tag |
| Phe 1126 | - | expression tag |
| Leu 1127 | - | expression tag |
| Gly 1128 | - | expression tag |
| Arg 1129 | - | expression tag |
| Ser 1130 | - | expression tag |
| Leu 1131 | - | expression tag |
| Glu 1132 | - | expression tag |
| Val 1133 | - | expression tag |
| Leu 1134 | - | expression tag |
| Phe 1135 | - | expression tag |
| Gln 1136 | - | expression tag |
| Gly 1137 | - | expression tag |
| Pro 1138 | - | expression tag |
| Gly 1139 | - | expression tag |
| Ser 1140 | - | expression tag |
| Gly 1141 | - | expression tag |
| Gly 1142 | - | expression tag |
| Leu 1143 | - | expression tag |
| Asn 1144 | - | expression tag |
| Asp 1145 | - | expression tag |
| Ile 1146 | - | expression tag |
| Phe 1147 | - | expression tag |
| Glu 1148 | - | expression tag |
| Ala 1149 | - | expression tag |
| Gln 1150 | - | expression tag |
| Lys 1151 | - | expression tag |
| Ile 1152 | - | expression tag |
| Glu 1153 | - | expression tag |
| Trp 1154 | - | expression tag |
| His 1155 | - | expression tag |
| Glu 1156 | - | expression tag |
| Gly 1157 | - | expression tag |
| Ser 1158 | - | expression tag |
| Gly 1159 | - | expression tag |
| His 1160 | - | expression tag |
| His 1161 | - | expression tag |
| His 1162 | - | expression tag |
| His 1163 | - | expression tag |
| His 1164 | - | expression tag |
| His 1165 | - | expression tag |
| His 1166 | - | expression tag |
| His 1167 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 153559.0 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 221.2 | |
| All* | Total formula weight | 154366.7 |
