9DEZ
PDCoV S trimer bound by three copies of PD41 Fab
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1166 | 128934.8 | 3 | UniProt (A0A6M5ICE2) Pfam (PF01600) Pfam (PF19209) Pfam (PF01601) UniProt (by SIFTS) (A0A140ESD0) | Porcine deltacoronavirus | |
| 2 | D, E, F (H, I, J) | PD41 Fab variable heavy-chain | polymer | 118 | 13020.5 | 3 | Mus musculus (mouse) | ||
| 3 | G, H, I (L, M, N) | PD41 Fab variable light-chain | polymer | 111 | 11617.7 | 3 | Mus musculus (mouse) | ||
| 4 | AA, BA, DA, EA, FA... (a, b, d, e, f...) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 27 | In PDB GlyTouCan (G15407YE) | |||
| 5 | CA, LA, M, PA, R... (c, l, G, p, R...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 6 | BB, CB, DB, EB, FB... (B, C, A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 30 | Chemie (NAG) | |||
| 7 | AB, LB, MB (A, B, C) | PALMITOLEIC ACID | non-polymer | 254.4 | 3 | Chemie (PAM) |
Sequence modifications
A, B, C: 2 - 1098 (UniProt: A0A6M5ICE2)
| PDB | External Database | Details |
|---|---|---|
| Gly 1099 | - | expression tag |
| Ser 1100 | - | expression tag |
| Gly 1101 | - | expression tag |
| Tyr 1102 | - | expression tag |
| Ile 1103 | - | expression tag |
| Pro 1104 | - | expression tag |
| Glu 1105 | - | expression tag |
| Ala 1106 | - | expression tag |
| Pro 1107 | - | expression tag |
| Arg 1108 | - | expression tag |
| Asp 1109 | - | expression tag |
| Gly 1110 | - | expression tag |
| Gln 1111 | - | expression tag |
| Ala 1112 | - | expression tag |
| Tyr 1113 | - | expression tag |
| Val 1114 | - | expression tag |
| Arg 1115 | - | expression tag |
| Lys 1116 | - | expression tag |
| Asp 1117 | - | expression tag |
| Gly 1118 | - | expression tag |
| Glu 1119 | - | expression tag |
| Trp 1120 | - | expression tag |
| Val 1121 | - | expression tag |
| Leu 1122 | - | expression tag |
| Leu 1123 | - | expression tag |
| Ser 1124 | - | expression tag |
| Thr 1125 | - | expression tag |
| Phe 1126 | - | expression tag |
| Leu 1127 | - | expression tag |
| Gly 1128 | - | expression tag |
| Arg 1129 | - | expression tag |
| Ser 1130 | - | expression tag |
| Leu 1131 | - | expression tag |
| Glu 1132 | - | expression tag |
| Val 1133 | - | expression tag |
| Leu 1134 | - | expression tag |
| Phe 1135 | - | expression tag |
| Gln 1136 | - | expression tag |
| Gly 1137 | - | expression tag |
| Pro 1138 | - | expression tag |
| Gly 1139 | - | expression tag |
| Ser 1140 | - | expression tag |
| Gly 1141 | - | expression tag |
| Gly 1142 | - | expression tag |
| Leu 1143 | - | expression tag |
| Asn 1144 | - | expression tag |
| Asp 1145 | - | expression tag |
| Ile 1146 | - | expression tag |
| Phe 1147 | - | expression tag |
| Glu 1148 | - | expression tag |
| Ala 1149 | - | expression tag |
| Gln 1150 | - | expression tag |
| Lys 1151 | - | expression tag |
| Ile 1152 | - | expression tag |
| Glu 1153 | - | expression tag |
| Trp 1154 | - | expression tag |
| His 1155 | - | expression tag |
| Glu 1156 | - | expression tag |
| Gly 1157 | - | expression tag |
| Ser 1158 | - | expression tag |
| Gly 1159 | - | expression tag |
| His 1160 | - | expression tag |
| His 1161 | - | expression tag |
| His 1162 | - | expression tag |
| His 1163 | - | expression tag |
| His 1164 | - | expression tag |
| His 1165 | - | expression tag |
| His 1166 | - | expression tag |
| His 1167 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 9 |
| Total formula weight | 460719.0 | |
| Branched | Number of molecules | 33 |
| Total formula weight | 18383.0 | |
| Non-Polymers* | Number of molecules | 33 |
| Total formula weight | 7399.5 | |
| All* | Total formula weight | 486501.5 |
