9DDC
Cryo-EM structure of gB-Ecto.516P, an HSV-1 glycoprotein B extracellular domain
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Glycoprotein B | polymer | 808 | 90304.1 | 3 | UniProt (A1Z0P7) Pfam (PF17416) Pfam (PF17417) Pfam (PF00606) UniProt (by SIFTS) (P10211) | Human alphaherpesvirus 1 (Herpes simplex virus type 1) | |
| 2 | D, E, F (D, E, F) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 3 | In PDB GlyTouCan (G42666HT) | |||
| 3 | G, H, I, J, K... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 9 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 728 (UniProt: A1Z0P7)
| PDB | External Database | Details |
|---|---|---|
| Pro 516 | His 516 | engineered mutation |
| Gly 729 | - | expression tag |
| Ser 730 | - | expression tag |
| Gly 731 | - | expression tag |
| Tyr 732 | - | expression tag |
| Ile 733 | - | expression tag |
| Pro 734 | - | expression tag |
| Glu 735 | - | expression tag |
| Ala 736 | - | expression tag |
| Pro 737 | - | expression tag |
| Arg 738 | - | expression tag |
| Asp 739 | - | expression tag |
| Gly 740 | - | expression tag |
| Gln 741 | - | expression tag |
| Ala 742 | - | expression tag |
| Tyr 743 | - | expression tag |
| Val 744 | - | expression tag |
| Arg 745 | - | expression tag |
| Lys 746 | - | expression tag |
| Asp 747 | - | expression tag |
| Gly 748 | - | expression tag |
| Glu 749 | - | expression tag |
| Trp 750 | - | expression tag |
| Val 751 | - | expression tag |
| Leu 752 | - | expression tag |
| Leu 753 | - | expression tag |
| Ser 754 | - | expression tag |
| Thr 755 | - | expression tag |
| Phe 756 | - | expression tag |
| Leu 757 | - | expression tag |
| Gly 758 | - | expression tag |
| Arg 759 | - | expression tag |
| Ser 760 | - | expression tag |
| Leu 761 | - | expression tag |
| Glu 762 | - | expression tag |
| Val 763 | - | expression tag |
| Leu 764 | - | expression tag |
| Phe 765 | - | expression tag |
| Gln 766 | - | expression tag |
| Gly 767 | - | expression tag |
| Pro 768 | - | expression tag |
| Gly 769 | - | expression tag |
| His 770 | - | expression tag |
| His 771 | - | expression tag |
| His 772 | - | expression tag |
| His 773 | - | expression tag |
| His 774 | - | expression tag |
| His 775 | - | expression tag |
| His 776 | - | expression tag |
| His 777 | - | expression tag |
| Ser 778 | - | expression tag |
| Ala 779 | - | expression tag |
| Trp 780 | - | expression tag |
| Ser 781 | - | expression tag |
| His 782 | - | expression tag |
| Pro 783 | - | expression tag |
| Gln 784 | - | expression tag |
| Phe 785 | - | expression tag |
| Glu 786 | - | expression tag |
| Lys 787 | - | expression tag |
| Gly 788 | - | expression tag |
| Gly 789 | - | expression tag |
| Gly 790 | - | expression tag |
| Ser 791 | - | expression tag |
| Gly 792 | - | expression tag |
| Gly 793 | - | expression tag |
| Gly 794 | - | expression tag |
| Gly 795 | - | expression tag |
| Ser 796 | - | expression tag |
| Gly 797 | - | expression tag |
| Gly 798 | - | expression tag |
| Ser 799 | - | expression tag |
| Ala 800 | - | expression tag |
| Trp 801 | - | expression tag |
| Ser 802 | - | expression tag |
| His 803 | - | expression tag |
| Pro 804 | - | expression tag |
| Gln 805 | - | expression tag |
| Phe 806 | - | expression tag |
| Glu 807 | - | expression tag |
| Lys 808 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 270912.4 | |
| Branched | Number of molecules | 3 |
| Total formula weight | 1273.2 | |
| Non-Polymers* | Number of molecules | 9 |
| Total formula weight | 1990.9 | |
| All* | Total formula weight | 274176.5 |
