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9DA9

Crystal structure of GluN1/GluN2A agonist-binding domains in complex with 7CKA and glutamate

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
Glutamate receptor ionotropic, NMDA 1polymer29233340.01UniProt (P35438)
Pfam (PF10613)
Pfam (PF00060)
UniProt (by SIFTS) (P35439)
Rattus norvegicus (Norway rat)GluN1,Glutamate [NMDA] receptor subunit zeta-1,N-methyl-D-aspartate receptor subunit NR1,NMD-R1
2B
(B)
Glutamate receptor ionotropic, NMDA 2Apolymer28331785.31UniProt (Q00959)
Pfam (PF10613)
Pfam (PF00060)
Rattus norvegicus (Norway rat)GluN2A,Glutamate [NMDA] receptor subunit epsilon-1,N-methyl D-aspartate receptor subtype 2A,NMDAR2A,NR2A
3C
(A)
7-Chlorokynurenic acidnon-polymer223.61Chemie (CKA)
4D
(B)
GLUTAMIC ACIDnon-polymer147.11Chemie (GLU)
5E, F
(A, B)
waterwater18.0202Chemie (HOH)
Sequence modifications
A: 2 - 292 (UniProt: P35438)
PDBExternal DatabaseDetails
Gly 1-expression tag
Ile 68Val 460conflict
-Glu 545deletion
-Ile 546deletion
-Pro 547deletion
-Arg 548deletion
-Ser 549deletion
-Thr 550deletion
-Leu 551deletion
-Asp 552deletion
-Ser 553deletion
-Phe 554deletion
-Met 555deletion
-Gln 556deletion
-Pro 557deletion
-Phe 558deletion
-Gln 559deletion
-Ser 560deletion
-Thr 561deletion
-Leu 562deletion
-Trp 563deletion
-Leu 564deletion
-Leu 565deletion
-Val 566deletion
-Gly 567deletion
-Leu 568deletion
-Ser 569deletion
-Val 570deletion
-His 571deletion
-Val 572deletion
-Val 573deletion
-Ala 574deletion
-Val 575deletion
-Met 576deletion
-Leu 577deletion
-Tyr 578deletion
-Leu 579deletion
-Leu 580deletion
-Asp 581deletion
-Arg 582deletion
-Phe 583deletion
-Ser 584deletion
-Pro 585deletion
-Phe 586deletion
-Gly 587deletion
-Arg 588deletion
-Phe 589deletion
-Lys 590deletion
-Val 591deletion
-Asn 592deletion
-Ser 593deletion
-Glu 594deletion
-Glu 595deletion
-Glu 596deletion
-Glu 597deletion
-Glu 598deletion
-Asp 599deletion
-Ala 600deletion
-Leu 601deletion
-Thr 602deletion
-Leu 603deletion
-Ser 604deletion
-Ser 605deletion
-Ala 606deletion
-Met 607deletion
-Trp 608deletion
-Phe 609deletion
-Ser 610deletion
-Trp 611deletion
-Gly 612deletion
-Val 613deletion
-Leu 614deletion
-Leu 615deletion
-Asn 616deletion
-Ser 617deletion
-Gly 618deletion
-Ile 619deletion
-Gly 620deletion
-Glu 621deletion
-Gly 622deletion
-Ala 623deletion
-Pro 624deletion
-Arg 625deletion
-Ser 626deletion
-Phe 627deletion
-Ser 628deletion
-Ala 629deletion
-Arg 630deletion
-Ile 631deletion
-Leu 632deletion
-Gly 633deletion
-Met 634deletion
-Val 635deletion
-Trp 636deletion
-Ala 637deletion
-Gly 638deletion
-Phe 639deletion
-Ala 640deletion
-Met 641deletion
-Ile 642deletion
-Ile 643deletion
-Val 644deletion
-Ala 645deletion
-Ser 646deletion
-Tyr 647deletion
-Thr 648deletion
-Ala 649deletion
-Asn 650deletion
-Leu 651deletion
-Ala 652deletion
-Ala 653deletion
-Phe 654deletion
-Leu 655deletion
-Val 656deletion
-Leu 657deletion
-Asp 658deletion
-Arg 659deletion
-Pro 660deletion
Gly 153Glu 661conflict
Thr 154Glu 662conflict
B: 5 - 286 (UniProt: Q00959)
PDBExternal DatabaseDetails
Ser 4-expression tag
-Ser 540deletion
-Asn 541deletion
-Gly 542deletion
-Thr 543deletion
-Val 544deletion
-Ser 545deletion
-Pro 546deletion
-Ser 547deletion
-Ala 548deletion
-Phe 549deletion
-Leu 550deletion
-Glu 551deletion
-Pro 552deletion
-Phe 553deletion
-Ser 554deletion
-Ala 555deletion
-Ser 556deletion
-Val 557deletion
-Trp 558deletion
-Val 559deletion
-Met 560deletion
-Met 561deletion
-Phe 562deletion
-Val 563deletion
-Met 564deletion
-Leu 565deletion
-Leu 566deletion
-Ile 567deletion
-Val 568deletion
-Ser 569deletion
-Ala 570deletion
-Ile 571deletion
-Ala 572deletion
-Val 573deletion
-Phe 574deletion
-Val 575deletion
-Phe 576deletion
-Glu 577deletion
-Tyr 578deletion
-Phe 579deletion
-Ser 580deletion
-Pro 581deletion
-Val 582deletion
-Gly 583deletion
-Tyr 584deletion
-Asn 585deletion
-Arg 586deletion
-Asn 587deletion
-Leu 588deletion
-Ala 589deletion
-Lys 590deletion
-Gly 591deletion
-Lys 592deletion
-Ala 593deletion
-Pro 594deletion
-His 595deletion
-Gly 596deletion
-Pro 597deletion
-Ser 598deletion
-Phe 599deletion
-Thr 600deletion
-Ile 601deletion
-Gly 602deletion
-Lys 603deletion
-Ala 604deletion
-Ile 605deletion
-Trp 606deletion
-Leu 607deletion
-Leu 608deletion
-Trp 609deletion
-Gly 610deletion
-Leu 611deletion
-Val 612deletion
-Phe 613deletion
-Asn 614deletion
-Asn 615deletion
-Ser 616deletion
-Val 617deletion
-Pro 618deletion
-Val 619deletion
-Gln 620deletion
-Asn 621deletion
-Pro 622deletion
-Lys 623deletion
-Gly 624deletion
-Thr 625deletion
-Thr 626deletion
-Ser 627deletion
-Lys 628deletion
-Ile 629deletion
-Met 630deletion
-Val 631deletion
-Ser 632deletion
-Val 633deletion
-Trp 634deletion
-Ala 635deletion
-Phe 636deletion
-Phe 637deletion
-Ala 638deletion
-Val 639deletion
-Ile 640deletion
-Phe 641deletion
-Leu 642deletion
-Ala 643deletion
-Ser 644deletion
-Tyr 645deletion
-Thr 646deletion
-Ala 647deletion
-Asn 648deletion
-Leu 649deletion
-Ala 650deletion
-Ala 651deletion
-Phe 652deletion
-Met 653deletion
-Ile 654deletion
-Gln 655deletion
-Glu 656deletion
-Glu 657deletion
-Phe 658deletion
Gly 143Val 659conflict
Thr 144Asp 660conflict
Thr 242Ser 758conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight65125.3
Non-Polymers*Number of molecules2
Total formula weight370.7
All*Total formula weight65496.1
*Water molecules are not included.

243531

PDB entries from 2025-10-22

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