9D4T
Structure of HKU5-20s spike glycoprotein
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1344 | 148600.7 | 3 | UniProt (S4X419) | Pipistrellus bat coronavirus HKU5 | S glycoprotein,E2,Peplomer protein |
| 2 | D, F, G, H, J... (D, F, G, H, J...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
| 3 | E, I, M (E, I, M) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 4 | AA, BA, CA, DA, EA... (A, B, C) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 36 | Chemie (NAG) |
Sequence modifications
A, B, C: 24 - 1301 (UniProt: S4X419)
| PDB | External Database | Details |
|---|---|---|
| Ala 748 | Arg 748 | conflict |
| Ser 749 | Phe 749 | conflict |
| Val 750 | Arg 750 | conflict |
| Gly 751 | Arg 751 | conflict |
| Pro 1063 | Thr 1063 | conflict |
| Pro 1064 | Val 1064 | conflict |
| Gly 1302 | - | expression tag |
| Ser 1303 | - | expression tag |
| Gly 1304 | - | expression tag |
| Arg 1305 | - | expression tag |
| Glu 1306 | - | expression tag |
| Asn 1307 | - | expression tag |
| Leu 1308 | - | expression tag |
| Tyr 1309 | - | expression tag |
| Phe 1310 | - | expression tag |
| Gln 1311 | - | expression tag |
| Gly 1312 | - | expression tag |
| Gly 1313 | - | expression tag |
| Gly 1314 | - | expression tag |
| Gly 1315 | - | expression tag |
| Ser 1316 | - | expression tag |
| Gly 1317 | - | expression tag |
| Tyr 1318 | - | expression tag |
| Ile 1319 | - | expression tag |
| Pro 1320 | - | expression tag |
| Glu 1321 | - | expression tag |
| Ala 1322 | - | expression tag |
| Pro 1323 | - | expression tag |
| Arg 1324 | - | expression tag |
| Asp 1325 | - | expression tag |
| Gly 1326 | - | expression tag |
| Gln 1327 | - | expression tag |
| Ala 1328 | - | expression tag |
| Tyr 1329 | - | expression tag |
| Val 1330 | - | expression tag |
| Arg 1331 | - | expression tag |
| Lys 1332 | - | expression tag |
| Asp 1333 | - | expression tag |
| Gly 1334 | - | expression tag |
| Glu 1335 | - | expression tag |
| Trp 1336 | - | expression tag |
| Val 1337 | - | expression tag |
| Leu 1338 | - | expression tag |
| Leu 1339 | - | expression tag |
| Ser 1340 | - | expression tag |
| Thr 1341 | - | expression tag |
| Phe 1342 | - | expression tag |
| Leu 1343 | - | expression tag |
| Gly 1344 | - | expression tag |
| His 1345 | - | expression tag |
| His 1346 | - | expression tag |
| His 1347 | - | expression tag |
| His 1348 | - | expression tag |
| His 1349 | - | expression tag |
| His 1350 | - | expression tag |
| His 1351 | - | expression tag |
| His 1352 | - | expression tag |
| Gly 1353 | - | expression tag |
| Leu 1354 | - | expression tag |
| Asn 1355 | - | expression tag |
| Asp 1356 | - | expression tag |
| Ile 1357 | - | expression tag |
| Phe 1358 | - | expression tag |
| Glu 1359 | - | expression tag |
| Ala 1360 | - | expression tag |
| Gln 1361 | - | expression tag |
| Lys 1362 | - | expression tag |
| Ile 1363 | - | expression tag |
| Glu 1364 | - | expression tag |
| Trp 1365 | - | expression tag |
| His 1366 | - | expression tag |
| Glu 1367 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 445802.2 | |
| Branched | Number of molecules | 12 |
| Total formula weight | 5579.2 | |
| Non-Polymers* | Number of molecules | 36 |
| Total formula weight | 7963.5 | |
| All* | Total formula weight | 459344.9 |
