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9CT9

Tricomplex of Compound 3, KRAS G12D, and CypA

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, C
(A, B)
Isoform 2B of GTPase KRaspolymer17019416.92UniProt (P01116)
Pfam (PF00071)
Homo sapiens (human)K-Ras 2,Ki-Ras,c-K-ras,c-Ki-ras
2B, D
(D, C)
Peptidyl-prolyl cis-trans isomerase Apolymer16618123.62UniProt (P62937)
Pfam (PF00160)
Homo sapiens (human)PPIase A,Cyclophilin A,Cyclosporin A-binding protein,Rotamase A
3E, I
(A, B)
PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTERnon-polymer522.22Chemie (GNP)
4F, J
(A, B)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5G, K
(A, B)
CHLORIDE IONnon-polymer35.52Chemie (CL)
6H, L
(A, B)
(2R)-2-{(5S)-7-[(2R)-2-aminopropanoyl]-1-oxo-2,7-diazaspiro[4.4]nonan-2-yl}-2-cyclopentyl-N-[(1M,8S,10S,14R,21M)-22-ethyl-4-hydroxy-21-{2-[(1R)-1-methoxyethyl]pyridin-3-yl}-18,18-dimethyl-9,15-dioxo-16-oxa-10,22,28-triazapentacyclo[18.5.2.1~2,6~.1~10,14~.0~23,27~]nonacosa-1(25),2(29),3,5,20,23,26-heptaen-8-yl]acetamide (non-preferred name)non-polymer959.22Chemie (A1AZY)
7M, N, O, P
(A, D, B, C)
waterwater18.01045Chemie (HOH)
Sequence modifications
A, B: 1 - 169 (UniProt: P01116)
PDBExternal DatabaseDetails
Ser 0-expression tag
Asp 12Gly 12engineered mutation
D, C: 1 - 165 (UniProt: P62937)
PDBExternal DatabaseDetails
Ser 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains4
Total formula weight75080.9
Non-Polymers*Number of molecules8
Total formula weight3082.3
All*Total formula weight78163.2
*Water molecules are not included.

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PDB entries from 2026-03-11

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