9CPC
Atomic model of porcine brain ventricles cilia doublet microtubule (48-nm periodicity)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (1A, 1B) | Armadillo repeat-containing protein 4 isoform 1 | polymer | 1048 | 116987.1 | 2 | UniProt (A0A480NQN9) Pfam (PF00514) Pfam (PF13646) | Sus scrofa (pig) | Outer dynein arm docking complex subunit 2 |
| 2 | C, D (1C, 1D) | Outer dynein arm-docking complex subunit 4 | polymer | 685 | 78707.8 | 2 | UniProt (A0A8D1SCU2) Pfam (PF13181) UniProt (by SIFTS) (F1S0P7) | Sus scrofa (pig) | Tetratricopeptide repeat protein 25 |
| 3 | E, F (1F, 1G) | EF-hand calcium binding domain 1 | polymer | 262 | 29379.8 | 2 | UniProt (A0A4X1U4E1) | Sus scrofa (pig) | |
| 4 | G, H, I (1H, 1I, 1J) | Coiled-coil domain-containing protein 114 isoform X2 | polymer | 711 | 80337.5 | 3 | UniProt (I3LGU2) Pfam (PF21773) | Sus scrofa (pig) | Outer dynein arm docking complex subunit 1 |
| 5 | J, K, L (1L, 1M, 1N) | Outer dynein arm docking complex subunit 3 | polymer | 620 | 72117.6 | 3 | UniProt (A0A5G2RIE6) UniProt (by SIFTS) (A0A8D0VZV9) | Sus scrofa (pig) | |
| 6 | M, N (1P, 1Q) | EFCAB6 | polymer | 1456 | 167103.7 | 2 | UniProt (by SIFTS) (A0A8D1CPW5) | Sus scrofa (pig) | |
| 7 | O, P, Q (1S, 1T, 1U) | Cilia- and flagella-associated protein 52 | polymer | 620 | 68199.9 | 3 | UniProt (F1SS88) Pfam (PF00400) | Sus scrofa (pig) | WD repeat-containing protein 16 |
| 8 | R, S, T, U (1W, 1X, 1Y, 1Z) | Cilia- and flagella-associated protein 45 | polymer | 549 | 65621.9 | 4 | UniProt (A0A480NP79) Pfam (PF13868) | Sus scrofa (pig) | |
| 9 | V, W (2B, 2C) | Cilia and flagella associated protein 210 | polymer | 552 | 66292.8 | 2 | UniProt (F1S1V4) Pfam (PF13868) | Sus scrofa (pig) | Coiled-coil domain-containing protein 173 |
| 10 | X, Y, Z (2E, 2F, 2G) | Cilia and flagella associated protein 276 | polymer | 170 | 19304.6 | 3 | UniProt (A0A8D0NP25) Pfam (PF12494) | Sus scrofa (pig) | |
| 11 | AA, BA, CA (2I, 2J, 2K) | Enkurin | polymer | 256 | 29949.8 | 3 | UniProt (A0A4X1TZW7) Pfam (PF13864) | Sus scrofa (pig) | |
| 12 | DA, EA, FA, GA, HA... (2M, 2N, 2O, 2P, 2Q...) | Parkin coregulated | polymer | 257 | 29412.2 | 6 | UniProt (A0A8D0JJX5) Pfam (PF10274) UniProt (by SIFTS) (A0A287AL41) | Sus scrofa (pig) | |
| 13 | JA, KA, LA, MA, NA (2T, 2U, 2V, 2W, 2X) | Cilia- and flagella-associated protein 20 | polymer | 193 | 22781.4 | 5 | UniProt (F2Z513) Pfam (PF05018) | Sus scrofa (pig) | |
| 14 | OA, PA, QA (3A, 3B, 3C) | Protein Flattop | polymer | 177 | 19236.7 | 3 | UniProt (A0A8D1FAM0) Pfam (PF22611) UniProt (by SIFTS) (I3LIQ4) | Sus scrofa (pig) | Cilia- and flagella-associated protein 126 |
| 15 | RA, SA, TA, UA (3E, 3F, 3G, 3H) | Tektin | polymer | 418 | 48432.9 | 4 | UniProt (A0A4X1ULV5) Pfam (PF03148) UniProt (by SIFTS) (F1RGN9) | Sus scrofa (pig) | |
| 16 | VA, WA, XA, YA (3J, 3K, 3L, 3M) | Tektin | polymer | 430 | 49973.7 | 4 | UniProt (A0A8D0ZEV6) Pfam (PF03148) UniProt (by SIFTS) (F1SV60) | Sus scrofa (pig) | |
| 17 | AB, BB, CB, ZA (3O, 3P, 3Q, 3R) | Tektin | polymer | 490 | 56552.8 | 4 | UniProt (A0A4X1SQE5) Pfam (PF03148) UniProt (by SIFTS) (F1SDE8) | Sus scrofa (pig) | |
| 18 | DB, EB, FB, GB (3T, 3U, 3V, 3W) | Tektin | polymer | 447 | 52015.5 | 4 | UniProt (A0A4X1SYW5) Pfam (PF03148) UniProt (by SIFTS) (A0A287A3S5) | Sus scrofa (pig) | |
| 19 | HB, IB (3Y, 3Z) | RIB43A domain with coiled-coils 2 | polymer | 377 | 45003.4 | 2 | UniProt (F1SM62) Pfam (PF05914) | Sus scrofa (pig) | |
| 20 | JB, KB (4A, 4B) | RIB43A-like with coiled-coils protein 1 | polymer | 379 | 44590.9 | 2 | UniProt (A0A8D0YSQ9) UniProt (by SIFTS) (A0A8D1F5U4) | Sus scrofa (pig) | |
| 21 | LB, MB, NB (4D, 4E, 4F) | EF-hand domain containing 1 | polymer | 640 | 74113.3 | 3 | UniProt (A0A480I608) Pfam (PF06565) | Sus scrofa (pig) | EF-hand domain-containing protein 1 isoform 1,EF-hand domain-containing protein 1 isoform X1 |
| 22 | OB, PB, QB, RB (4H, 4I, 4J, 4K) | EF-hand domain-containing family member C2 | polymer | 748 | 87254.1 | 4 | UniProt (K7GSU4) Pfam (PF06565) | Sus scrofa (pig) | |
| 23 | SB, TB, VB, WB, XB (4M, 4N, 4P, 4Q, 4R) | Ciliary microtubule inner protein 2B | polymer | 272 | 30596.6 | 5 | UniProt (A0A8D1CRM3) Pfam (PF10629) UniProt (by SIFTS) (F1SG06) | Sus scrofa (pig) | |
| 24 | UB (4O) | Ciliary microtubule inner protein 2B | polymer | 252 | 28408.0 | 1 | UniProt (A0A8D1QC18) Pfam (PF10629) UniProt (by SIFTS) (F1SG06) | Sus scrofa (pig) | |
| 25 | YB (4T) | Sperm-associated antigen 8 isoform 1 | polymer | 469 | 50537.3 | 1 | UniProt (A0A480VJN4) UniProt (by SIFTS) (A0A4X1VNX0) | Sus scrofa (pig) | |
| 26 | AC, ZB (4V, 4W) | Nucleoside diphosphate kinase homolog 7 | polymer | 377 | 42532.8 | 2 | UniProt (A0A8D0SNF8) UniProt (by SIFTS) (A0A4X1V0A0) | Sus scrofa (pig) | NDK 7 |
| 27 | BC, CC (4Y, 4Z) | Cilia and flagella associated protein 161 | polymer | 314 | 35381.2 | 2 | UniProt (A0A8D0J8R7) Pfam (PF24569) UniProt (by SIFTS) (F1RID8) | Sus scrofa (pig) | |
| 28 | DC (5B) | Chromosome 1 C9orf135 homolog | polymer | 230 | 26817.9 | 1 | UniProt (A0A8D0NZG3) Pfam (PF15139) UniProt (by SIFTS) (A0A287B1D0) | Sus scrofa (pig) | |
| 29 | EC, FC (5D, 5E) | Piercer of microtubule wall 1 | polymer | 136 | 15692.2 | 2 | UniProt (A0A8D1K3C6) Pfam (PF14892) UniProt (by SIFTS) (A0A4X1SVE2) | Sus scrofa (pig) | |
| 30 | GC (5G) | Chromosome 1 C15orf65 homolog | polymer | 121 | 13888.6 | 1 | UniProt (A0A4X1TH04) Pfam (PF14892) UniProt (by SIFTS) (A0A287AA69) | Sus scrofa (pig) | |
| 31 | HC, IC (5I, 5J) | EF-hand domain family member B | polymer | 879 | 98402.2 | 2 | UniProt (F1RS61) Pfam (PF13499) Pfam (PF25325) | Sus scrofa (pig) | |
| 32 | JC (5L) | Cilia and flagella associated protein 141 | polymer | 101 | 12197.3 | 1 | UniProt (A0A8D0XUD8) Pfam (PF15104) | Sus scrofa (pig) | |
| 33 | KC, LC (5N, 5O) | Meiosis-specific nuclear structural protein 1 | polymer | 495 | 60768.8 | 2 | UniProt (A0A4X1TJ85) Pfam (PF13868) UniProt (by SIFTS) (A0A5G2RCJ8) | Sus scrofa (pig) | |
| 34 | MC, NC (5Q, 5R) | Cilia- and flagella-associated protein 53 | polymer | 514 | 62200.1 | 2 | UniProt (A0A286ZZD2) Pfam (PF13868) | Sus scrofa (pig) | |
| 35 | OC, PC (5T, 5U) | CFAP107/C1orf158 | polymer | 196 | 23449.9 | 2 | UniProt (A0A8D1WB49) | Sus scrofa (pig) | |
| 36 | QC, RC, SC, TC (5W, 5X, 5Y, 5Z) | Cilia and flagella associated protein 77 | polymer | 282 | 32726.7 | 4 | UniProt (F1S0U2) Pfam (PF14825) | Sus scrofa (pig) | |
| 37 | UC (6A) | Cilia and flagella associated protein 144 | polymer | 135 | 16325.5 | 1 | UniProt (F1SFB7) Pfam (PF14886) | Sus scrofa (pig) | Protein FAM183A |
| 38 | VC, WC (6C, 6D) | Cilia-and flagella-associated protein 96 | polymer | 310 | 34594.4 | 2 | UniProt (A0A4X1VW16) Pfam (PF15239) | Sus scrofa (pig) | |
| 39 | AD, BD, CD, DD, XC... (6F, 6G, 6H, 6I, 6J...) | Sperm acrosome associated 9 | polymer | 223 | 25335.2 | 7 | UniProt (A0A8D0ZB69) | Sus scrofa (pig) | |
| 40 | AG, AJ, AK, AL, BE... (AA, AE, AF, AG, AH...) | Tubulin alpha chain | polymer | 447 | 49797.0 | 136 | UniProt (A0A5G2QX54) Pfam (PF00091) Pfam (PF03953) | Sus scrofa (pig) | |
| 41 | AE, AF, AH, AI, AM... (AB, AL, AM, AN, AO...) | Tubulin beta chain | polymer | 449 | 49798.2 | 133 | UniProt (A0A5G2QGK1) Pfam (PF00091) Pfam (PF03953) | Sus scrofa (pig) | |
| 42 | AO, AP, AQ, AS, AT... (BF, DG, FN, KB, MH...) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 136 | Chemie (GTP) PubChem (177679032) PubChem (135400627) PubChem (135487750) PubChem (136088935) PubChem (136803486) PubChem (135398633) PubChem (135544356) PubChem (135547949) PubChem (135600366) PubChem (135749822) PubChem (136005188) PubChem (136073923) PubChem (136240914) PubChem (136664747) PubChem (136772743) PubChem (136772744) PubChem (136803487) PubChem (137286749) PubChem (164715984) PubChem (171699466) | Sus scrofa (pig) | ||
| 43 | AR, AV, AX, BQ, BR... (HP, QN, VB, FN, HQ...) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 133 | Chemie (GDP) PubChem (136073927) PubChem (135398619) PubChem (135402030) PubChem (135431654) PubChem (135566337) PubChem (135760556) PubChem (136026707) PubChem (136053418) PubChem (136663964) PubChem (136664748) PubChem (136759848) PubChem (136759849) PubChem (136759850) PubChem (136836636) PubChem (136847074) PubChem (172898537) |
Sequence modifications
1L, 1M, 1N: 1 - 620 (UniProt: A0A5G2RIE6)
4M, 4N, 4P, 4Q, 4R: 1 - 272 (UniProt: A0A8D1CRM3)
4O: 30 - 281 (UniProt: A0A8D1QC18)
5T, 5U: 1 - 195 (UniProt: A0A8D1WB49)
| PDB | External Database | Details |
|---|---|---|
| Ala 478 | - | insertion |
| Asp 479 | - | insertion |
| Ser 480 | - | insertion |
| Ala 481 | - | insertion |
| Pro 482 | - | insertion |
| Glu 483 | - | insertion |
| Glu 484 | - | insertion |
| Ala 485 | - | insertion |
| Pro 486 | - | insertion |
| Pro 487 | - | insertion |
| Arg 488 | - | insertion |
| Ala 489 | - | insertion |
| Pro 490 | - | insertion |
| Gln 491 | - | insertion |
| Asp 492 | - | insertion |
| Val 493 | - | insertion |
| Arg 494 | - | insertion |
| Gly 495 | - | insertion |
| Ser 496 | - | insertion |
| Ser 497 | - | insertion |
| Thr 498 | - | insertion |
| Ile 499 | - | insertion |
| Thr 500 | - | insertion |
| Gln 501 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ala 271 | - | insertion |
| - | Ser 272 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Ala 271 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Unk 40 | Thr 46 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 377 |
| Total formula weight | 18666705.8 | |
| Non-Polymers* | Number of molecules | 269 |
| Total formula weight | 130098.2 | |
| All* | Total formula weight | 18796804.0 |
