9CPC
Atomic model of porcine brain ventricles cilia doublet microtubule (48-nm periodicity)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (1A, 1B) | Armadillo repeat-containing protein 4 isoform 1 | polymer | 1048 | 116987.1 | 2 | UniProt (A0A480NQN9) Pfam (PF00514) Pfam (PF13646) | Sus scrofa (pig) | Outer dynein arm docking complex subunit 2 |
| 2 | C, D (1C, 1D) | Outer dynein arm-docking complex subunit 4 | polymer | 685 | 78707.8 | 2 | UniProt (A0A8D1SCU2) Pfam (PF13181) UniProt (by SIFTS) (F1S0P7) | Sus scrofa (pig) | Tetratricopeptide repeat protein 25 |
| 3 | E, F (1F, 1G) | EF-hand calcium binding domain 1 | polymer | 262 | 29379.8 | 2 | UniProt (A0A4X1U4E1) Pfam (PF13202) Pfam (PF13499) | Sus scrofa (pig) | |
| 4 | G, H, I (1H, 1I, 1J) | Coiled-coil domain-containing protein 114 isoform X2 | polymer | 711 | 80337.5 | 3 | UniProt (I3LGU2) Pfam (PF21773) | Sus scrofa (pig) | Outer dynein arm docking complex subunit 1 |
| 5 | J, K, L (1L, 1M, 1N) | Outer dynein arm docking complex subunit 3 | polymer | 620 | 72117.6 | 3 | UniProt (A0A5G2RIE6) UniProt (by SIFTS) (A0A8D0VZV9) | Sus scrofa (pig) | |
| 6 | M, N (1P, 1Q) | EFCAB6 | polymer | 1456 | 167103.7 | 2 | Pfam (PF13499) Pfam (PF13833) Pfam (PF13202) Pfam (PF08976) UniProt (by SIFTS) (A0A8D1CPW5) | Sus scrofa (pig) | |
| 7 | O, P, Q (1S, 1T, 1U) | Cilia- and flagella-associated protein 52 | polymer | 620 | 68199.9 | 3 | UniProt (F1SS88) Pfam (PF00400) | Sus scrofa (pig) | WD repeat-containing protein 16 |
| 8 | R, S, T, U (1W, 1X, 1Y, 1Z) | Cilia- and flagella-associated protein 45 | polymer | 549 | 65621.9 | 4 | UniProt (A0A480NP79) Pfam (PF13868) | Sus scrofa (pig) | |
| 9 | V, W (2B, 2C) | Cilia and flagella associated protein 210 | polymer | 552 | 66292.8 | 2 | UniProt (F1S1V4) Pfam (PF13868) | Sus scrofa (pig) | Coiled-coil domain-containing protein 173 |
| 10 | X, Y, Z (2E, 2F, 2G) | Cilia and flagella associated protein 276 | polymer | 170 | 19304.6 | 3 | UniProt (A0A8D0NP25) Pfam (PF12494) | Sus scrofa (pig) | |
| 11 | AA, BA, CA (2I, 2J, 2K) | Enkurin | polymer | 256 | 29949.8 | 3 | UniProt (A0A4X1TZW7) Pfam (PF13864) | Sus scrofa (pig) | |
| 12 | DA, EA, FA, GA, HA... (2M, 2N, 2O, 2P, 2Q...) | Parkin coregulated | polymer | 257 | 29412.2 | 6 | UniProt (A0A8D0JJX5) Pfam (PF10274) UniProt (by SIFTS) (A0A287AL41) | Sus scrofa (pig) | |
| 13 | JA, KA, LA, MA, NA (2T, 2U, 2V, 2W, 2X) | Cilia- and flagella-associated protein 20 | polymer | 193 | 22781.4 | 5 | UniProt (F2Z513) Pfam (PF05018) | Sus scrofa (pig) | |
| 14 | OA, PA, QA (3A, 3B, 3C) | Protein Flattop | polymer | 177 | 19236.7 | 3 | UniProt (A0A8D1FAM0) Pfam (PF22611) UniProt (by SIFTS) (I3LIQ4) | Sus scrofa (pig) | Cilia- and flagella-associated protein 126 |
| 15 | RA, SA, TA, UA (3E, 3F, 3G, 3H) | Tektin | polymer | 418 | 48432.9 | 4 | UniProt (A0A4X1ULV5) Pfam (PF03148) UniProt (by SIFTS) (F1RGN9) | Sus scrofa (pig) | |
| 16 | VA, WA, XA, YA (3J, 3K, 3L, 3M) | Tektin | polymer | 430 | 49973.7 | 4 | UniProt (A0A8D0ZEV6) Pfam (PF03148) UniProt (by SIFTS) (F1SV60) | Sus scrofa (pig) | |
| 17 | AB, BB, CB, ZA (3O, 3P, 3Q, 3R) | Tektin | polymer | 490 | 56552.8 | 4 | UniProt (A0A4X1SQE5) Pfam (PF03148) UniProt (by SIFTS) (F1SDE8) | Sus scrofa (pig) | |
| 18 | DB, EB, FB, GB (3T, 3U, 3V, 3W) | Tektin | polymer | 447 | 52015.5 | 4 | UniProt (A0A4X1SYW5) Pfam (PF03148) UniProt (by SIFTS) (A0A287A3S5) | Sus scrofa (pig) | |
| 19 | HB, IB (3Y, 3Z) | RIB43A domain with coiled-coils 2 | polymer | 377 | 45003.4 | 2 | UniProt (F1SM62) Pfam (PF05914) | Sus scrofa (pig) | |
| 20 | JB, KB (4A, 4B) | RIB43A-like with coiled-coils protein 1 | polymer | 379 | 44590.9 | 2 | UniProt (A0A8D0YSQ9) Pfam (PF05914) UniProt (by SIFTS) (A0A8D1F5U4) | Sus scrofa (pig) | |
| 21 | LB, MB, NB (4D, 4E, 4F) | EF-hand domain containing 1 | polymer | 640 | 74113.3 | 3 | UniProt (A0A480I608) Pfam (PF06565) | Sus scrofa (pig) | EF-hand domain-containing protein 1 isoform 1,EF-hand domain-containing protein 1 isoform X1 |
| 22 | OB, PB, QB, RB (4H, 4I, 4J, 4K) | EF-hand domain-containing family member C2 | polymer | 748 | 87254.1 | 4 | UniProt (K7GSU4) Pfam (PF06565) | Sus scrofa (pig) | |
| 23 | SB, TB, VB, WB, XB (4M, 4N, 4P, 4Q, 4R) | Ciliary microtubule inner protein 2B | polymer | 272 | 30596.6 | 5 | UniProt (A0A8D1CRM3) Pfam (PF10629) UniProt (by SIFTS) (F1SG06) | Sus scrofa (pig) | |
| 24 | UB (4O) | Ciliary microtubule inner protein 2B | polymer | 252 | 28408.0 | 1 | UniProt (A0A8D1QC18) Pfam (PF10629) UniProt (by SIFTS) (F1SG06) | Sus scrofa (pig) | |
| 25 | YB (4T) | Sperm-associated antigen 8 isoform 1 | polymer | 469 | 50537.3 | 1 | UniProt (A0A480VJN4) Pfam (PF22584) UniProt (by SIFTS) (A0A4X1VNX0) | Sus scrofa (pig) | |
| 26 | AC, ZB (4V, 4W) | Nucleoside diphosphate kinase homolog 7 | polymer | 377 | 42532.8 | 2 | UniProt (A0A8D0SNF8) Pfam (PF00334) UniProt (by SIFTS) (A0A4X1V0A0) | Sus scrofa (pig) | NDK 7 |
| 27 | BC, CC (4Y, 4Z) | Cilia and flagella associated protein 161 | polymer | 314 | 35381.2 | 2 | UniProt (A0A8D0J8R7) UniProt (by SIFTS) (F1RID8) | Sus scrofa (pig) | |
| 28 | DC (5B) | Chromosome 1 C9orf135 homolog | polymer | 230 | 26817.9 | 1 | UniProt (A0A8D0NZG3) Pfam (PF15139) UniProt (by SIFTS) (A0A287B1D0) | Sus scrofa (pig) | |
| 29 | EC, FC (5D, 5E) | Piercer of microtubule wall 1 | polymer | 136 | 15692.2 | 2 | UniProt (A0A8D1K3C6) Pfam (PF14892) UniProt (by SIFTS) (A0A4X1SVE2) | Sus scrofa (pig) | |
| 30 | GC (5G) | Chromosome 1 C15orf65 homolog | polymer | 121 | 13888.6 | 1 | UniProt (A0A4X1TH04) Pfam (PF14892) UniProt (by SIFTS) (A0A287AA69) | Sus scrofa (pig) | |
| 31 | HC, IC (5I, 5J) | EF-hand domain family member B | polymer | 879 | 98402.2 | 2 | UniProt (F1RS61) Pfam (PF13499) | Sus scrofa (pig) | |
| 32 | JC (5L) | Cilia and flagella associated protein 141 | polymer | 101 | 12197.3 | 1 | UniProt (A0A8D0XUD8) Pfam (PF15104) | Sus scrofa (pig) | |
| 33 | KC, LC (5N, 5O) | Meiosis-specific nuclear structural protein 1 | polymer | 495 | 60768.8 | 2 | UniProt (A0A4X1TJ85) Pfam (PF13868) UniProt (by SIFTS) (A0A5G2RCJ8) | Sus scrofa (pig) | |
| 34 | MC, NC (5Q, 5R) | Cilia- and flagella-associated protein 53 | polymer | 514 | 62200.1 | 2 | UniProt (A0A286ZZD2) Pfam (PF13868) | Sus scrofa (pig) | |
| 35 | OC, PC (5T, 5U) | CFAP107/C1orf158 | polymer | 196 | 23449.9 | 2 | UniProt (A0A8D1WB49) Pfam (PF22595) | Sus scrofa (pig) | |
| 36 | QC, RC, SC, TC (5W, 5X, 5Y, 5Z) | Cilia and flagella associated protein 77 | polymer | 282 | 32726.7 | 4 | UniProt (F1S0U2) Pfam (PF14825) | Sus scrofa (pig) | |
| 37 | UC (6A) | Cilia and flagella associated protein 144 | polymer | 135 | 16325.5 | 1 | UniProt (F1SFB7) Pfam (PF14886) | Sus scrofa (pig) | Protein FAM183A |
| 38 | VC, WC (6C, 6D) | Cilia-and flagella-associated protein 96 | polymer | 310 | 34594.4 | 2 | UniProt (A0A4X1VW16) Pfam (PF15239) | Sus scrofa (pig) | |
| 39 | AD, BD, CD, DD, XC... (6F, 6G, 6H, 6I, 6J...) | Sperm acrosome associated 9 | polymer | 223 | 25335.2 | 7 | UniProt (A0A8D0ZB69) Pfam (PF15120) | Sus scrofa (pig) | |
| 40 | AG, AJ, AK, AL, BE... (AA, AE, AF, AG, AH...) | Tubulin alpha chain | polymer | 447 | 49797.0 | 136 | UniProt (A0A5G2QX54) Pfam (PF00091) Pfam (PF03953) | Sus scrofa (pig) | |
| 41 | AE, AF, AH, AI, AM... (AB, AL, AM, AN, AO...) | Tubulin beta chain | polymer | 449 | 49798.2 | 133 | UniProt (A0A5G2QGK1) Pfam (PF00091) Pfam (PF03953) | Sus scrofa (pig) | |
| 42 | AO, AP, AQ, AS, AT... (BF, DG, FN, KB, MH...) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 136 | Chemie (GTP) | Sus scrofa (pig) | ||
| 43 | AR, AV, AX, BQ, BR... (HP, QN, VB, FN, HQ...) | GUANOSINE-5'-DIPHOSPHATE | non-polymer | 443.2 | 133 | Chemie (GDP) |
Sequence modifications
1L, 1M, 1N: 1 - 620 (UniProt: A0A5G2RIE6)
4M, 4N, 4P, 4Q, 4R: 1 - 272 (UniProt: A0A8D1CRM3)
4O: 30 - 281 (UniProt: A0A8D1QC18)
5T, 5U: 1 - 195 (UniProt: A0A8D1WB49)
| PDB | External Database | Details |
|---|---|---|
| Ala 478 | - | insertion |
| Asp 479 | - | insertion |
| Ser 480 | - | insertion |
| Ala 481 | - | insertion |
| Pro 482 | - | insertion |
| Glu 483 | - | insertion |
| Glu 484 | - | insertion |
| Ala 485 | - | insertion |
| Pro 486 | - | insertion |
| Pro 487 | - | insertion |
| Arg 488 | - | insertion |
| Ala 489 | - | insertion |
| Pro 490 | - | insertion |
| Gln 491 | - | insertion |
| Asp 492 | - | insertion |
| Val 493 | - | insertion |
| Arg 494 | - | insertion |
| Gly 495 | - | insertion |
| Ser 496 | - | insertion |
| Ser 497 | - | insertion |
| Thr 498 | - | insertion |
| Ile 499 | - | insertion |
| Thr 500 | - | insertion |
| Gln 501 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ala 271 | - | insertion |
| - | Ser 272 | deletion |
| PDB | External Database | Details |
|---|---|---|
| Ala 271 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Unk 40 | Thr 46 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 377 |
| Total formula weight | 18666705.8 | |
| Non-Polymers* | Number of molecules | 269 |
| Total formula weight | 130098.2 | |
| All* | Total formula weight | 18796804.0 |
