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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9CO8

JN.1 spike/Nanosota-9 complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(B, C, A)		Spike glycoproteinpolymer1253139255.93UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)		Severe acute respiratory syndrome coronavirus 2S glycoprotein,E2,Peplomer protein
2D, E, F
(E, F, D)		Nanosota-9polymer15016311.63Vicugna pacos
3G, H, I, J, K...
(V, W, X, G, H...)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.416In PDB
GlyTouCan (G42666HT)
Sequence modifications
B, C, A: 29 - 1207 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Met -9-initiating methionine
Asp -8-expression tag
Ala -7-expression tag
Met -6-expression tag
Lys -5-expression tag
Arg -4-expression tag
Gly -3-expression tag
Leu -2-expression tag
Cys -1-expression tag
Cys 0-expression tag
Val 1-expression tag
Leu 2-expression tag
Leu 3-expression tag
Leu 4-expression tag
Cys 5-expression tag
Gly 6-expression tag
Ala 7-expression tag
Val 8-expression tag
Phe 9-expression tag
Val 10-expression tag
Ser 11-expression tag
Ala 12-expression tag
Ser 13-expression tag
Gln 14-expression tag
Cys 15-expression tag
Val 16-expression tag
Met 17-expression tag
Pro 18-expression tag
Leu 19-expression tag
Phe 20-expression tag
Asn 21-expression tag
Leu 22-expression tag
Ile 23-expression tag
Thr 24-expression tag
Thr 25-expression tag
Thr 26-expression tag
Gln 27-expression tag
Ser 28-expression tag
Leu 51Ser 50conflict
-His 69deletion
-Val 70deletion
Phe 126Val 127conflict
Asp 141Gly 142conflict
-Tyr 144deletion
Ser 155Phe 157conflict
Gly 156Arg 158conflict
-Asn 211deletion
Ile 209Leu 212conflict
Gly 210Val 213conflict
Phe 213Leu 216conflict
Asn 242His 245conflict
Asp 261Ala 264conflict
Val 329Ile 332conflict
His 336Gly 339conflict
Thr 353Lys 356conflict
Phe 368Ser 371conflict
Pro 370Ser 373conflict
Phe 372Ser 375conflict
Ala 373Thr 376conflict
Lys 400Arg 403conflict
Asn 402Asp 405conflict
Ser 405Arg 408conflict
Asn 414Lys 417conflict
Lys 437Asn 440conflict
His 442Val 445conflict
Ser 443Gly 446conflict
Asp 447Asn 450conflict
Trp 449Leu 452conflict
Ser 452Leu 455conflict
Lys 457Asn 460conflict
Asn 474Ser 477conflict
Lys 475Thr 478conflict
Lys 478Asn 481conflict
-Val 483deletion
Lys 480Glu 484conflict
Pro 482Phe 486conflict
Arg 494Gln 498conflict
Tyr 497Asn 501conflict
His 501Tyr 505conflict
Lys 550Glu 554conflict
Val 566Ala 570conflict
Gly 610Asp 614conflict
Ser 617Pro 621conflict
Tyr 651His 655conflict
Lys 675Asn 679conflict
Arg 677Pro 681conflict
Ala 678Arg 682conflict
Gly 679Arg 683conflict
Lys 760Asn 764conflict
Tyr 792Asp 796conflict
Pro 813Phe 817conflict
Pro 888Ala 892conflict
Pro 895Ala 899conflict
Phe 935Ser 939conflict
Pro 938Ala 942conflict
His 950Gln 954conflict
Lys 965Asn 969conflict
Pro 982Lys 986conflict
Pro 983Val 987conflict
Leu 1139Pro 1143conflict
Gly 1208-expression tag
Ser 1209-expression tag
Gly 1210-expression tag
Tyr 1211-expression tag
Ile 1212-expression tag
Pro 1213-expression tag
Glu 1214-expression tag
Ala 1215-expression tag
Pro 1216-expression tag
Arg 1217-expression tag
Asp 1218-expression tag
Gly 1219-expression tag
Gln 1220-expression tag
Ala 1221-expression tag
Tyr 1222-expression tag
Val 1223-expression tag
Arg 1224-expression tag
Lys 1225-expression tag
Asp 1226-expression tag
Gly 1227-expression tag
Glu 1228-expression tag
Trp 1229-expression tag
Val 1230-expression tag
Leu 1231-expression tag
Leu 1232-expression tag
Ser 1233-expression tag
Thr 1234-expression tag
Phe 1235-expression tag
Leu 1236-expression tag
Gly 1237-expression tag
His 1238-expression tag
His 1239-expression tag
His 1240-expression tag
His 1241-expression tag
His 1242-expression tag
His 1243-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight466702.5
BranchedNumber of molecules16
Total formula weight6790.4
All*Total formula weight473492.9
*Water molecules are not included.

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PDB entries from 2026-01-21

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