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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9CO6

BA.5 spike/Nanosota-9 complex

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, C
(B, C, A)		Spike glycoproteinpolymer1252139006.53UniProt (P0DTC2)
Pfam (PF16451)
Pfam (PF09408)
Pfam (PF19209)
Pfam (PF01601)		Severe acute respiratory syndrome coronavirus 2S glycoprotein,E2,Peplomer protein
2D, E, F
(E, F, D)		Nanosota-9polymer15016311.63Vicugna pacos
3G, H, I, J, K...
(H, J, K, L, M...)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.48In PDB
GlyTouCan (G42666HT)
4AA, BA, CA, DA, EA...
(C, A, B)		2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.220Chemie (NAG)
Sequence modifications
B, C, A: 3 - 1220 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Met -9-initiating methionine
Asp -8-expression tag
Ala -7-expression tag
Met -6-expression tag
Lys -5-expression tag
Arg -4-expression tag
Gly -3-expression tag
Leu -2-expression tag
Cys -1-expression tag
Cys 0-expression tag
Val 1-expression tag
Leu 2-expression tag
Cys 5-insertion
Gly 6-insertion
Ala 7-insertion
Val 8Pro 9conflict
Phe 9Leu 10conflict
Ala 12-insertion
Ile 19Thr 19conflict
-Leu 24deletion
-Pro 25deletion
-Pro 26deletion
Ser 24Ala 27conflict
-His 69deletion
-Val 70deletion
Asp 137Gly 142conflict
Gly 208Val 213conflict
Asp 334Gly 339conflict
Phe 366Ser 371conflict
Pro 368Ser 373conflict
Phe 370Ser 375conflict
Ala 371Thr 376conflict
Asn 400Asp 405conflict
Ser 403Arg 408conflict
Asn 412Lys 417conflict
Lys 435Asn 440conflict
Arg 447Leu 452conflict
Asn 472Ser 477conflict
Lys 473Thr 478conflict
Ala 479Glu 484conflict
Val 481Phe 486conflict
Arg 493Gln 498conflict
Tyr 496Asn 501conflict
His 500Tyr 505conflict
Gly 609Asp 614conflict
Tyr 650His 655conflict
Lys 674Asn 679conflict
His 676Pro 681conflict
Ala 677Arg 682conflict
Gly 678Arg 683conflict
Lys 759Asn 764conflict
Tyr 791Asp 796conflict
Pro 812Phe 817conflict
Pro 887Ala 892conflict
Pro 894Ala 899conflict
Pro 937Ala 942conflict
His 949Gln 954conflict
Lys 964Asn 969conflict
Pro 981Lys 986conflict
Pro 982Val 987conflict
Gly 1207Trp 1212conflict
Ser 1208Pro 1213conflict
Gly 1209Trp 1214conflict
Pro 1212Trp 1217conflict
Glu 1213Leu 1218conflict
Ala 1214Gly 1219conflict
Pro 1215Phe 1220conflict
Arg 1216Ile 1221conflict
Asp 1217Ala 1222conflict
Gln 1219Leu 1224conflict
Ala 1220Ile 1225conflict
Tyr 1221-expression tag
Val 1222-expression tag
Arg 1223-expression tag
Lys 1224-expression tag
Asp 1225-expression tag
Gly 1226-expression tag
Glu 1227-expression tag
Trp 1228-expression tag
Val 1229-expression tag
Leu 1230-expression tag
Leu 1231-expression tag
Ser 1232-expression tag
Thr 1233-expression tag
Phe 1234-expression tag
Leu 1235-expression tag
Gly 1236-expression tag
His 1237-expression tag
His 1238-expression tag
His 1239-expression tag
His 1240-expression tag
His 1241-expression tag
His 1242-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains6
Total formula weight465954.2
BranchedNumber of molecules8
Total formula weight3395.2
Non-Polymers*Number of molecules20
Total formula weight4424.2
All*Total formula weight473773.6
*Water molecules are not included.

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PDB entries from 2025-06-11

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