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9CKG

Crystal structure of SMYD2 active site mutant

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
N-lysine methyltransferase SMYD2polymer43349684.01UniProt (Q9NRG4)
Pfam (PF00856)
Pfam (PF01753)
Homo sapiens (human)HSKM-B,Histone methyltransferase SMYD2,Lysine N-methyltransferase 3C,SET and MYND domain-containing protein 2
2B
(A)
S-ADENOSYL-L-HOMOCYSTEINEnon-polymer384.41Chemie (SAH)
3C, D, E
(A)
ZINC IONnon-polymer65.43Chemie (ZN)
4F, G
(A)
DI(HYDROXYETHYL)ETHERnon-polymer106.12Chemie (PEG)
5H
(A)
TETRAETHYLENE GLYCOLnon-polymer194.21Chemie (PG4)
6I
(A)
ETHANOLnon-polymer46.11Chemie (EOH)
7J
(A)
GLYCEROLnon-polymer92.11Chemie (GOL)
Sequence modifications
A: 1 - 433 (UniProt: Q9NRG4)
PDBExternal DatabaseDetails
Ala 184Phe 184engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains1
Total formula weight49684.0
Non-Polymers*Number of molecules9
Total formula weight1125.3
All*Total formula weight50809.3
*Water molecules are not included.

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PDB entries from 2025-12-10

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