9C8K
Rabbit Hemorrhagic Disease Virus reinitiation stimulating TURBS RNA bound to rabbit ribosome
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Small ribosomal subunit protein uS2 | polymer | 295 | 32883.9 | 1 | UniProt (G1TLT8) Pfam (PF00318) Pfam (PF16122) | Oryctolagus cuniculus (rabbit) | 37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40 |
| 2 | B (B) | eS1 | polymer | 264 | 30002.1 | 1 | UniProt (G1SS70) Pfam (PF01015) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S3a |
| 3 | C (C) | 40S ribosomal protein uS5 | polymer | 293 | 31376.5 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 4 | D (D) | 40S ribosomal protein uS3 | polymer | 243 | 26729.4 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 5 | E (E) | 40S ribosomal protein eS4 | polymer | 263 | 29512.8 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 6 | F (F) | uS7 | polymer | 204 | 22913.5 | 1 | UniProt (G1TFM5) Pfam (PF00177) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S5 |
| 7 | G (G) | eS6 | polymer | 249 | 28751.9 | 1 | UniProt (G1TM55) Pfam (PF01092) UniProt (by SIFTS) (A0A5K1UJS7) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S6 |
| 8 | H (H) | eS7 | polymer | 194 | 22168.9 | 1 | UniProt (G1SVB0) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S7 |
| 9 | I (I) | eS8 | polymer | 208 | 24263.4 | 1 | UniProt (G1TJW1) Pfam (PF01201) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S8 |
| 10 | J (J) | uS4 | polymer | 194 | 22641.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (rabbit) | Ribosomal protein S9 |
| 11 | K (K) | S10_plectin domain-containing protein | polymer | 165 | 18933.8 | 1 | UniProt (G1TPV3) Pfam (PF03501) | Oryctolagus cuniculus (rabbit) | |
| 12 | L (L) | uS17 | polymer | 158 | 18468.8 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S11 |
| 13 | M (M) | eS12 | polymer | 132 | 14539.0 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S12 |
| 14 | N (N) | uS15 | polymer | 151 | 17259.4 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (rabbit) | Ribosomal protein S13 |
| 15 | O (O) | Small ribosomal subunit protein uS11 | polymer | 151 | 16302.8 | 1 | UniProt (G1T1F0) Pfam (PF00411) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S14 |
| 16 | P (P) | 40S ribosomal protein uS19 | polymer | 145 | 17076.2 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 17 | Q (Q) | uS9 | polymer | 146 | 16477.4 | 1 | UniProt (G1SGX4) Pfam (PF00380) | Oryctolagus cuniculus (rabbit) | |
| 18 | R (R) | Small ribosomal subunit protein eS17 | polymer | 135 | 15578.2 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S17 |
| 19 | S (S) | uS13 | polymer | 152 | 17759.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S18 |
| 20 | T (T) | 40S ribosomal protein eS19 | polymer | 145 | 16091.6 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 21 | U (U) | uS10 | polymer | 119 | 13398.8 | 1 | UniProt (G1SIZ2) Pfam (PF00338) | Oryctolagus cuniculus (rabbit) | |
| 22 | V (V) | eS21 | polymer | 83 | 9124.4 | 1 | UniProt (G1TM82) Pfam (PF01249) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S21 |
| 23 | W (W) | uS8 | polymer | 130 | 14865.6 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (rabbit) | 40S Ribosomal protein S15a |
| 24 | X (X) | uS12 | polymer | 143 | 15844.7 | 1 | UniProt (G1SZ47) Pfam (PF00164) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S23 |
| 25 | Y (Y) | Small ribosomal subunit protein eS24 | polymer | 133 | 15463.3 | 1 | UniProt (A0A5F9D2E6) Pfam (PF01282) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S24 |
| 26 | Z (Z) | eS25 | polymer | 125 | 13776.2 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (rabbit) | |
| 27 | AA (a) | 40S ribosomal protein S26 | polymer | 115 | 13047.5 | 1 | UniProt (G1TFE8) Pfam (PF01283) | Oryctolagus cuniculus (rabbit) | |
| 28 | BA (b) | eS27 | polymer | 84 | 9480.2 | 1 | UniProt (G1TZ76) Pfam (PF01667) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S27 |
| 29 | CA (c) | eS28 | polymer | 69 | 7855.1 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (rabbit) | 40S Ribosomal protein S28 |
| 30 | DA (d) | uS14 | polymer | 56 | 6690.8 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (rabbit) | 40S ribosomal protein S29 |
| 31 | EA (e) | 40S ribosomal protein eS30 | polymer | 59 | 6668.9 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 32 | FA (f) | eS31 | polymer | 156 | 18004.0 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) | Oryctolagus cuniculus (rabbit) | Ribosomal protein S27a |
| 33 | GA (g) | Receptor for Activated C Kinase 1 (RACK1) | polymer | 317 | 35115.7 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (rabbit) | |
| 34 | HA (1) | 18S ribosomal RNA | polymer | 1869 | 602776.9 | 1 | Oryctolagus cuniculus (rabbit) | ||
| 35 | IA (2) | RHDV Reinitiation stimulating element RNA | polymer | 91 | 29219.3 | 1 | Rabbit hemorrhagic disease virus | ||
| 36 | AB, AC, AD, BB, BC... (1, Q, X) | MAGNESIUM ION | non-polymer | 24.3 | 74 | Chemie (MG) | |||
| 37 | MA, NA (a, d) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence modifications
A: 1 - 295 (UniProt: G1TLT8)
I: 1 - 208 (UniProt: G1TJW1)
R: 1 - 135 (UniProt: G1TU13)
V: 1 - 83 (UniProt: G1TM82)
a: 1 - 115 (UniProt: G1TFE8)
| PDB | External Database | Details |
|---|---|---|
| Ala 290 | Thr 290 | conflict |
| Asp 293 | Glu 293 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 47 | Gly 47 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Pro 134 | Ala 134 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Asn 3 | Ser 3 | conflict |
| Asp 4 | Asn 4 | conflict |
| Gln 33 | Pro 33 | conflict |
| Phe 50 | Ser 50 | conflict |
| Ala 75 | Ser 75 | conflict |
| Asp 76 | His 76 | conflict |
| Lys 81 | Gln 81 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 28 | Cys 28 | conflict |
| Ala 56 | Val 56 | conflict |
| Arg 109 | Pro 109 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 35 |
| Total formula weight | 1251062.1 | |
| Non-Polymers* | Number of molecules | 76 |
| Total formula weight | 1929.4 | |
| All* | Total formula weight | 1252991.5 |
