9C4G
Cutibacterium acnes 50S ribosomal subunit with Clindamycin bound
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (c) | 50S ribosomal protein L2 | polymer | 278 | 30309.9 | 1 | UniProt (A0A2B7JMV5) | Cutibacterium acnes | |
| 2 | B (d) | 50S ribosomal protein L3 | polymer | 223 | 23553.1 | 1 | UniProt (A0A1G9KW65) | Cutibacterium acnes | |
| 3 | C (e) | 50S ribosomal protein L4 | polymer | 301 | 32342.2 | 1 | UniProt (A0A2B7I5M5) | Cutibacterium acnes | |
| 4 | D (f) | 50S ribosomal protein L5 | polymer | 210 | 23901.8 | 1 | UniProt (A0A3E2DDM1) | Cutibacterium acnes | |
| 5 | E (g) | 50S ribosomal protein L6 | polymer | 180 | 19868.8 | 1 | UniProt (A0A2B7I5S3) | Cutibacterium acnes | |
| 6 | F (i) | 50S ribosomal protein L13 | polymer | 147 | 16325.8 | 1 | UniProt (A0A2B7I6I7) | Cutibacterium acnes | |
| 7 | G (j) | 50S ribosomal protein L14 | polymer | 122 | 13503.9 | 1 | UniProt (A0A2B7JMZ8) | Cutibacterium acnes | |
| 8 | H (k) | 50S ribosomal protein L15 | polymer | 146 | 15542.9 | 1 | UniProt (A0A2B7IUA0) | Cutibacterium acnes | |
| 9 | I (l) | 50S ribosomal protein L16 | polymer | 139 | 15700.2 | 1 | UniProt (A0A2B7I5M8) | Cutibacterium acnes | |
| 10 | J (m) | Large ribosomal subunit protein bL17 | polymer | 187 | 20058.6 | 1 | UniProt (A0A8B2VJI7) | Cutibacterium acnes | |
| 11 | K (n) | 50S ribosomal protein L18 | polymer | 127 | 13727.8 | 1 | UniProt (A0A2B7JN02) | Cutibacterium acnes | |
| 12 | L (o) | 50S ribosomal protein L19 | polymer | 117 | 13106.1 | 1 | UniProt (A0A2C6LKT3) | Cutibacterium acnes | |
| 13 | M (p) | 50S ribosomal protein L20 | polymer | 123 | 13988.0 | 1 | UniProt (A0A2B7I6V3) | Cutibacterium acnes | |
| 14 | N (q) | Large ribosomal subunit protein bL21 | polymer | 102 | 11087.8 | 1 | UniProt (Q6A9I3) | Cutibacterium acnes | 50S ribosomal protein L21 |
| 15 | O (r) | 50S ribosomal protein L22 | polymer | 153 | 16729.5 | 1 | UniProt (A0A2B7ITY5) | Cutibacterium acnes | |
| 16 | P (s) | 50S ribosomal protein L23 | polymer | 102 | 11349.2 | 1 | UniProt (A0A2C6LEQ5) | Cutibacterium acnes | |
| 17 | Q (t) | Large ribosomal subunit protein uL24 | polymer | 122 | 13514.6 | 1 | UniProt (Q6A6N7) | Cutibacterium acnes | 50S ribosomal protein L24 |
| 18 | R (u) | 50S ribosomal protein L25 | polymer | 205 | 22349.1 | 1 | UniProt (A0A2B7IYF8) | Cutibacterium acnes | General stress protein CTC |
| 19 | S (v) | 50S ribosomal protein L27 | polymer | 89 | 9540.7 | 1 | UniProt (A0A2B7IGT1) | Cutibacterium acnes | |
| 20 | T (w) | 50S ribosomal protein L28 | polymer | 61 | 6953.2 | 1 | UniProt (A0A2B7I7B7) | Cutibacterium acnes | |
| 21 | U (x) | 50S ribosomal protein L29 | polymer | 77 | 8899.1 | 1 | UniProt (A0A2B7JB12) | Cutibacterium acnes | |
| 22 | V (y) | 50S ribosomal protein L30 | polymer | 60 | 6932.2 | 1 | UniProt (A0A2B7I5Y4) | Cutibacterium acnes | |
| 23 | W (z) | 50S ribosomal protein L32 | polymer | 63 | 6991.1 | 1 | UniProt (A0A2B7I771) | Cutibacterium acnes | |
| 24 | X (0) | 50S ribosomal protein L33 | polymer | 56 | 6725.9 | 1 | UniProt (A0A2C6LJM0) | Cutibacterium acnes | |
| 25 | Y (1) | 50S ribosomal protein L34 | polymer | 44 | 5185.1 | 1 | UniProt (A0A2B7IDI8) | Cutibacterium acnes | |
| 26 | Z (2) | Large ribosomal subunit protein bL35 | polymer | 68 | 7457.9 | 1 | UniProt (Q6A7V2) | Cutibacterium acnes | 50S ribosomal protein L35 |
| 27 | AA (4) | 50S ribosomal protein L31 | polymer | 69 | 7731.8 | 1 | UniProt (A0A2B7JUW7) | Cutibacterium acnes | |
| 28 | BA (a) | 23S rRNA | polymer | 3086 | 1002554.6 | 1 | GenBank (CP012350) | Cutibacterium acnes | |
| 29 | CA (b) | 5S rRNA | polymer | 120 | 38770.1 | 1 | GenBank (2179609306) | Cutibacterium acnes | |
| 30 | DA (V) | 50S ribosomal protein bL37 | polymer | 24 | 2744.3 | 1 | UniProt (A0A9Y2YAG1) | Cutibacterium acnes | |
| 31 | EA (3) | 50S ribosomal protein L36 | polymer | 37 | 4386.4 | 1 | UniProt (A0A2B7JN22) | Cutibacterium acnes | |
| 32 | AB, AC, AD, AE, AF... (a, c, d, k, b) | MAGNESIUM ION | non-polymer | 24.3 | 247 | Chemie (MG) | |||
| 33 | IA, JA, KA, LA (w, z, 0, 4) | ZINC ION | non-polymer | 65.4 | 4 | Chemie (ZN) | |||
| 34 | TJ (a) | CLINDAMYCIN | non-polymer | 425.0 | 1 | Chemie (CLY) | |||
| 35 | AK, BK, CK, DK, EK... (i, m, o, p, r...) | water | water | 18.0 | 156 | Chemie (HOH) |
Sequence modifications
m: 1 - 187 (UniProt: A0A8B2VJI7)
q: 1 - 102 (UniProt: Q6A9I3)
a: 1 - 3086 (GenBank: CP012350)
| PDB | External Database | Details |
|---|---|---|
| Ala 124 | Thr 124 | conflict |
| Pro 185 | Ser 185 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 52 | Val 52 | conflict |
| PDB | External Database | Details |
|---|---|---|
| A 63 | G 609004 | conflict |
| C 524 | G 609465 | conflict |
| Psu 1038 | G 609979 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 31 |
| Total formula weight | 1441831.6 | |
| Non-Polymers* | Number of molecules | 252 |
| Total formula weight | 6690.0 | |
| All* | Total formula weight | 1448521.5 |
