9C1H
Rhesus rotavirus (upright structure at 2.88 Angstrom resolution)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, B, BA, CA... (0, 1, P, Q, R...) | Outer capsid glycoprotein VP7 | polymer | 326 | 37136.5 | 19 | UniProt (P12476) Pfam (PF00434) | Simian rotavirus A strain RRV | |
| 2 | C, D, E (2, 3, 4) | Outer capsid protein VP4 | polymer | 776 | 86655.6 | 3 | UniProt (P12473) Pfam (PF00426) Pfam (PF17477) Pfam (PF17478) | Simian rotavirus A strain RRV | Hemagglutinin |
| 3 | F, G (A, B) | Inner capsid protein VP2 | polymer | 887 | 103426.0 | 2 | UniProt (B3F2X3) Pfam (PF05087) | Simian rotavirus A strain RRV | VP2A |
| 4 | FA, GA, H, HA, I... (C, D, E, F, G...) | Intermediate capsid protein VP6 | polymer | 397 | 44962.8 | 19 | UniProt (B2BN53) Pfam (PF00980) | Simian rotavirus A strain RRV | |
| 5 | RA (a) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 6 | CD, EC, EF, JF, KE... (V, Q, x, y, t...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 17 | Chemie (NAG) | |||
| 7 | AB, AC, AD, AF, BB... (1, P, U, w, V...) | CALCIUM ION | non-polymer | 40.1 | 76 | Chemie (CA) | |||
| 8 | AE, BE, CB, CE, EB... (f, C, g, h, D...) | ZINC ION | non-polymer | 65.4 | 26 | Chemie (ZN) | |||
| 9 | DB, DE, HE, IB, OB... (C, h, j, F, J...) | CHLORIDE ION | non-polymer | 35.5 | 7 | Chemie (CL) |
Sequence modifications
2, 3, 4: 1 - 776 (UniProt: P12473)
| PDB | External Database | Details |
|---|---|---|
| Thr 73 | Ser 73 | conflict |
| Glu 311 | Asp 311 | conflict |
| Val 338 | Ile 338 | conflict |
| Leu 421 | Phe 421 | conflict |
| Ser 445 | Gly 445 | conflict |
| Arg 446 | Gly 446 | conflict |
| Asn 454 | Tyr 454 | conflict |
| Phe 468 | Leu 468 | conflict |
| Asp 519 | Tyr 519 | conflict |
| Phe 690 | Tyr 690 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 43 |
| Total formula weight | 2026705.5 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 910.8 | |
| Non-Polymers* | Number of molecules | 126 |
| Total formula weight | 8755.3 | |
| All* | Total formula weight | 2036371.6 |
