9BTH
Rhesus Fab 42056-a.01 in complex with CAP256SU.wk34 RnS SOSIP Env
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | Heavy | polymer | 244 | 26095.2 | 1 | Macaca mulatta | ||
| 2 | B (L) | Light | polymer | 220 | 24365.1 | 1 | Macaca mulatta | ||
| 3 | C, E, G (G, D, F) | Envelope glycoprotein gp120 | polymer | 471 | 53322.4 | 3 | UniProt (A0A0N9FF17) | Human immunodeficiency virus 1 | Env polyprotein |
| 4 | D, F, H (C, E, B) | Envelope glycoprotein gp41 | polymer | 154 | 17355.7 | 3 | UniProt (A0A0N9FF17) UniProt (by SIFTS) (A0A6M2Z8U6) | Human immunodeficiency virus 1 | |
| 5 | I, O (A, O) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 2 | In PDB GlyTouCan (G15407YE) | |||
| 6 | J, N, P, R, S... (I, N, P, R, S...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 6 | In PDB GlyTouCan (G42666HT) | |||
| 7 | K, Q, T (J, Q, T) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 3 | In PDB GlyTouCan (G22768VO) | |||
| 8 | L (K) | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB GlyTouCan (G34442SS) | |||
| 9 | M (M) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1559.4 | 1 | In PDB GlyTouCan (G83161QT) | |||
| 10 | U (U) | alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1235.1 | 1 | In PDB GlyTouCan (G91845HM) | |||
| 11 | AA, AB, BA, BB, CA... (G, D, E, F, C...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 56 | Chemie (NAG) |
Sequence modifications
G, D, F: 33 - 511 (UniProt: A0A0N9FF17)
C, E, B: 511 - 664 (UniProt: A0A0N9FF17)
| PDB | External Database | Details |
|---|---|---|
| Ile 204 | Ala 196 | conflict |
| Met 302 | Asn 294 | conflict |
| Leu 320 | Thr 310 | conflict |
| Pro 329 | Ala 320 | conflict |
| Pro 437 | Ser 423 | conflict |
| Asn 442 | Glu 428 | conflict |
| Cys 501 | Ala 487 | conflict |
| Asn 502 | Arg 488 | conflict |
| Thr 504 | Arg 490 | conflict |
| Arg 508 | Lys 494 | conflict |
| Arg 509 | Glu 495 | conflict |
| Arg 510 | Lys 496 | conflict |
| Arg 512 | - | expression tag |
| Arg 513 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Asn 535 | Ile 522 | conflict |
| Pro 559 | Ile 546 | conflict |
| Gly 569 | Thr 556 | conflict |
| Phe 573 | Ile 560 | conflict |
| Glu 588 | Lys 575 | conflict |
| Val 589 | Asp 576 | conflict |
| Cys 605 | Thr 592 | conflict |
| Pro 609 | Tyr 596 | conflict |
| Gly 636 | Asp 623 | conflict |
| Phe 651 | Lys 638 | conflict |
| Ile 655 | Ser 642 | conflict |
| Asn 660 | Leu 647 | conflict |
| Thr 662 | Ala 649 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 262494.7 | |
| Branched | Number of molecules | 14 |
| Total formula weight | 10319.4 | |
| Non-Polymers* | Number of molecules | 56 |
| Total formula weight | 12387.6 | |
| All* | Total formula weight | 285201.8 |
