9BTB
Cryo-EM density map of HKU1 spike glycoprotein D1 domain in complex with 9O-acetyl GD3 sialoglycan (Active state, locally refined)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike glycoprotein | polymer | 1348 | 150632.7 | 1 | UniProt (Q5MQD0) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Human coronavirus HKU1 | S glycoprotein,E2,Peplomer protein |
| 2 | B (B) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 1 | In PDB GlyTouCan (G22768VO) | |||
| 3 | C (C) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | D, E, F, G, H... (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 6 | Chemie (NAG) | |||
| 5 | J (A) | 5-acetamido-8-O-(5-acetamido-9-O-acetyl-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranonosyl)-3,5-dideoxy-D-glycero-alpha-D-galacto-non-2-ulopyranosonic acid | non-polymer | 642.6 | 1 | Chemie (A1AR1) |
Sequence modifications
A: 14 - 1298 (UniProt: Q5MQD0)
| PDB | External Database | Details |
|---|---|---|
| Pro 1026 | Thr 1026 | conflict |
| Pro 1071 | Ala 1071 | conflict |
| Pro 1072 | Leu 1072 | conflict |
| Ser 1299 | - | expression tag |
| Gly 1300 | - | expression tag |
| Gly 1301 | - | expression tag |
| Tyr 1302 | - | expression tag |
| Ile 1303 | - | expression tag |
| Pro 1304 | - | expression tag |
| Glu 1305 | - | expression tag |
| Ala 1306 | - | expression tag |
| Pro 1307 | - | expression tag |
| Arg 1308 | - | expression tag |
| Asp 1309 | - | expression tag |
| Gly 1310 | - | expression tag |
| Gln 1311 | - | expression tag |
| Ala 1312 | - | expression tag |
| Tyr 1313 | - | expression tag |
| Val 1314 | - | expression tag |
| Arg 1315 | - | expression tag |
| Lys 1316 | - | expression tag |
| Asp 1317 | - | expression tag |
| Gly 1318 | - | expression tag |
| Glu 1319 | - | expression tag |
| Trp 1320 | - | expression tag |
| Val 1321 | - | expression tag |
| Leu 1322 | - | expression tag |
| Leu 1323 | - | expression tag |
| Ser 1324 | - | expression tag |
| Thr 1325 | - | expression tag |
| Phe 1326 | - | expression tag |
| Leu 1327 | - | expression tag |
| Asn 1328 | - | expression tag |
| Ser 1329 | - | expression tag |
| Gly 1330 | - | expression tag |
| Arg 1331 | - | expression tag |
| Ala 1332 | - | expression tag |
| His 1333 | - | expression tag |
| His 1334 | - | expression tag |
| His 1335 | - | expression tag |
| His 1336 | - | expression tag |
| His 1337 | - | expression tag |
| His 1338 | - | expression tag |
| Gly 1339 | - | expression tag |
| Ala 1340 | - | expression tag |
| Gly 1341 | - | expression tag |
| Gly 1342 | - | expression tag |
| Leu 1343 | - | expression tag |
| Asn 1344 | - | expression tag |
| Asp 1345 | - | expression tag |
| Ile 1346 | - | expression tag |
| Phe 1347 | - | expression tag |
| Glu 1348 | - | expression tag |
| Ala 1349 | - | expression tag |
| Gln 1350 | - | expression tag |
| Lys 1351 | - | expression tag |
| Ile 1352 | - | expression tag |
| Glu 1353 | - | expression tag |
| Trp 1354 | - | expression tag |
| His 1355 | - | expression tag |
| Glu 1356 | - | expression tag |
| Asp 1357 | - | expression tag |
| Thr 1358 | - | expression tag |
| Ala 1359 | - | expression tag |
| Ala 1360 | - | expression tag |
| Ala 1361 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 150632.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1335.2 | |
| Non-Polymers* | Number of molecules | 7 |
| Total formula weight | 1969.8 | |
| All* | Total formula weight | 153937.8 |
