9BS0
YphC-treated 45SYphC particle. Class 5
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23S rRNA | polymer | 2927 | 949300.1 | 1 | GenBank (1775206404) | Bacillus subtilis subsp. subtilis str. 168 | |
| 2 | B (B) | 5S rRNA | polymer | 119 | 38423.9 | 1 | GenBank (2592576696) | Bacillus subtilis subsp. subtilis str. 168 | |
| 3 | C (C) | Large ribosomal subunit protein uL2 | polymer | 277 | 30335.1 | 1 | UniProt (P42919) Pfam (PF00181) Pfam (PF03947) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L2,BL2 |
| 4 | D (D) | Large ribosomal subunit protein uL3 | polymer | 209 | 22723.3 | 1 | UniProt (P42920) Pfam (PF00297) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L3,BL3 |
| 5 | E (E) | Large ribosomal subunit protein uL4 | polymer | 207 | 22425.0 | 1 | UniProt (P42921) Pfam (PF00573) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L4 |
| 6 | F (F) | Large ribosomal subunit protein uL6 | polymer | 179 | 19543.4 | 1 | UniProt (P46898) Pfam (PF00347) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L6,BL10 |
| 7 | G (G) | Large ribosomal subunit protein uL13 | polymer | 145 | 16407.1 | 1 | UniProt (P70974) Pfam (PF00572) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L13 |
| 8 | H (H) | Large ribosomal subunit protein uL14 | polymer | 122 | 13175.3 | 1 | UniProt (P12875) Pfam (PF00238) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L14 |
| 9 | I (I) | Large ribosomal subunit protein uL15 | polymer | 146 | 15410.7 | 1 | UniProt (P19946) Pfam (PF00828) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L15 |
| 10 | J (J) | Large ribosomal subunit protein bL17 | polymer | 120 | 13774.8 | 1 | UniProt (P20277) Pfam (PF01196) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L17,BL15,BL21 |
| 11 | K (K) | Large ribosomal subunit protein bL19 | polymer | 115 | 13416.9 | 1 | UniProt (O31742) Pfam (PF01245) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L19 |
| 12 | L (L) | Large ribosomal subunit protein bL20 | polymer | 118 | 13538.0 | 1 | UniProt (P55873) Pfam (PF00453) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L20 |
| 13 | M (M) | Large ribosomal subunit protein bL21 | polymer | 102 | 11296.1 | 1 | UniProt (P26908) Pfam (PF00829) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L21,BL20 |
| 14 | N (N) | Large ribosomal subunit protein uL22 | polymer | 113 | 12481.6 | 1 | UniProt (P42060) Pfam (PF00237) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L22 |
| 15 | O (O) | Large ribosomal subunit protein uL23 | polymer | 95 | 10978.8 | 1 | UniProt (P42924) Pfam (PF00276) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L23 |
| 16 | P (P) | Large ribosomal subunit protein uL24 | polymer | 103 | 11166.1 | 1 | UniProt (P0CI78) Pfam (PF00467) Pfam (PF17136) | Bacillus subtilis subsp. subtilis str. 168 | 12 kDa DNA-binding protein,50S ribosomal protein L24,BL23,HPB12 |
| 17 | Q (Q) | Large ribosomal subunit protein bL27 | polymer | 94 | 10391.9 | 1 | UniProt (P05657) Pfam (PF01016) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L27,BL24,BL30 |
| 18 | R (R) | Large ribosomal subunit protein uL29 | polymer | 66 | 7728.0 | 1 | UniProt (P12873) Pfam (PF00831) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L29 |
| 19 | S (S) | Large ribosomal subunit protein uL30 | polymer | 59 | 6650.8 | 1 | UniProt (P19947) Pfam (PF00327) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L30,BL27 |
| 20 | T (T) | Large ribosomal subunit protein bL32 | polymer | 59 | 6745.1 | 1 | UniProt (O34687) Pfam (PF01783) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L32 |
| 21 | U (U) | Large ribosomal subunit protein bL34 | polymer | 44 | 5271.3 | 1 | UniProt (P05647) Pfam (PF00468) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L34 |
| 22 | V (V) | Large ribosomal subunit protein uL18 | polymer | 120 | 12993.8 | 1 | UniProt (P46899) Pfam (PF00861) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L18,BL16 |
| 23 | W (W) | GTPase Der | polymer | 436 | 48846.5 | 1 | UniProt (P50743) Pfam (PF01926) Pfam (PF14714) | Bacillus subtilis subsp. subtilis str. 168 | GTP-binding protein EngA |
| 24 | X (Z) | Large ribosomal subunit protein bL33A | polymer | 49 | 5915.9 | 1 | UniProt (P56849) Pfam (PF00471) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L33 1 |
| 25 | Y (Y) | Large ribosomal subunit protein uL1 | polymer | 232 | 25026.9 | 1 | UniProt (Q06797) Pfam (PF00687) | Bacillus subtilis subsp. subtilis str. 168 | 50S ribosomal protein L1,BL1 |
| 26 | AA, Z (W) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 2 | Chemie (GNP) |
Sequence modifications
A: 1 - 2927 (GenBank: 1775206404)
W: 1 - 436 (UniProt: P50743)
| PDB | External Database | Details |
|---|---|---|
| C 267 | U 31970 | conflict |
| U 640 | C 32343 | conflict |
| C 1558 | G 33261 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Thr 70 | Ala 70 | conflict |
| Ser 98 | Ala 98 | conflict |
| Cys 159 | Val 159 | conflict |
| Ala 217 | Ser 217 | conflict |
| Gly 262 | Ala 262 | conflict |
| Asn 269 | Glu 269 | conflict |
| Ile 292 | Val 292 | conflict |
| Gln 311 | Glu 311 | conflict |
| Glu 315 | Asp 315 | conflict |
| Val 325 | Ile 325 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 25 |
| Total formula weight | 1343966.3 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 1044.4 | |
| All* | Total formula weight | 1345010.7 |
