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9BJ1

Crystal structure of inhibitor GNE-6893 bound to HPK1

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
Mitogen-activated protein kinase kinase kinase kinase 1polymer31135018.42UniProt (Q92918)
Pfam (PF00069)
Homo sapiens (human)Hematopoietic progenitor kinase,MAPK/ERK kinase kinase kinase 1,MEK kinase kinase 1,MEKKK 1
2C, K, L
(A, B)
2-(N-MORPHOLINO)-ETHANESULFONIC ACIDnon-polymer195.23Chemie (MES)
3D, E, F, N, O
(A, B)
1,2-ETHANEDIOLnon-polymer62.15Chemie (EDO)
4G, H, P
(A, B)
DIMETHYL SULFOXIDEnon-polymer78.13Chemie (DMS)
5I
(A)
(9S)-2-{[(6P)-8-amino-6-(5-amino-4-methylpyridin-3-yl)-7-fluoroisoquinolin-3-yl]amino}-6-methyl-5,6-dihydro-4H-pyrazolo[1,5-d][1,4]diazepin-7(8H)-onenon-polymer446.51Chemie (A1APR)
6J
(A)
SODIUM IONnon-polymer23.01Chemie (NA)
7M
(B)
DI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
8Q
(B)
(4S,5R,7R,11aP)-10-{[(3R)-3-hydroxy-1-methyl-2-oxopyrrolidin-3-yl]ethynyl}-N~3~-methyl-6,7-dihydro-5H-5,7-methanoimidazo[2,1-a][2]benzazepine-2,3-dicarboxamidenon-polymer433.51Chemie (A1APQ)
9R, S
(A, B)
waterwater18.0191Chemie (HOH)
Sequence modifications
A, B: 2 - 293 (UniProt: Q92918)
PDBExternal DatabaseDetails
Met -14-initiating methionine
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
His -9-expression tag
His -8-expression tag
Gly -7-expression tag
Glu -6-expression tag
Asn -5-expression tag
Leu -4-expression tag
Tyr -3-expression tag
Phe -2-expression tag
Gln -1-expression tag
Gly 0-expression tag
Ser 1-expression tag
Glu 165Thr 165conflict
Glu 171Ser 171conflict
Gly 294-expression tag
Asn 295-expression tag
Ser 296-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight70036.9
Non-Polymers*Number of molecules15
Total formula weight2139.5
All*Total formula weight72176.4
*Water molecules are not included.

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PDB entries from 2025-07-09

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