9BH5

High-resolution C. elegans 80S ribosome structure - class 1

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	AD	Small ribosomal subunit protein uS3	polymer	247	27356.8	1	UniProt (P48152) In PDB	Caenorhabditis elegans	40S ribosomal protein S3
2	AB	Small ribosomal subunit protein eS1	polymer	257	29014.7	1	UniProt (P48154) In PDB	Caenorhabditis elegans	40S ribosomal protein S3a
3	AC	Small ribosomal subunit protein uS5	polymer	272	29011.5	1	UniProt (P51403) In PDB	Caenorhabditis elegans	40S ribosomal protein S2
4	AE	Small ribosomal subunit protein eS4	polymer	259	29101.0	1	UniProt (Q9N3X2) In PDB	Caenorhabditis elegans	40S ribosomal protein S4
5	A7	5S rRNA	polymer	119	38254.6	1	GenBank (6842)	Caenorhabditis elegans
6	A8	5.8S rRNA	polymer	153	49250.1	1	GenBank (6830)	Caenorhabditis elegans
7	B2	18S rRNA	polymer	1754	565164.6	1	GenBank (25167357)	Caenorhabditis elegans
8	A5	28S rRNA	polymer	3510	1132082.4	1		Caenorhabditis elegans
9	AR	Small ribosomal subunit protein eS17	polymer	130	14966.2	1	UniProt (O01692) In PDB	Caenorhabditis elegans	40S ribosomal protein S17
10	AK	Plectin/S10 N-terminal domain-containing protein	polymer	149	16897.3	1	UniProt (O01869) In PDB	Caenorhabditis elegans
11	AW	Ribosomal Protein, Small subunit	polymer	130	14758.4	1	UniProt (O17218) In PDB	Caenorhabditis elegans
12	AS	Small ribosomal subunit protein uS13	polymer	154	17809.8	1	UniProt (O18240) In PDB	Caenorhabditis elegans	40S ribosomal protein S18
13	AT	Small ribosomal subunit protein eS19	polymer	146	16355.9	1	UniProt (O18650) In PDB	Caenorhabditis elegans	40S ribosomal protein S19
14	Aa	Small ribosomal subunit protein eS26	polymer	117	13282.6	1	UniProt (O45499) In PDB	Caenorhabditis elegans	40S ribosomal protein S26
15	Af	Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein	polymer	163	18135.1	1	UniProt (P37165) In PDB	Caenorhabditis elegans
16	AA	Small ribosomal subunit protein uS2	polymer	276	30735.8	1	UniProt (P46769) In PDB	Caenorhabditis elegans	40S ribosomal protein SA
17	AO	Small ribosomal subunit protein uS11	polymer	152	16278.8	1	UniProt (P48150) In PDB	Caenorhabditis elegans	40S ribosomal protein S14
18	AI	Small ribosomal subunit protein eS8	polymer	208	23800.4	1	UniProt (P48156) In PDB	Caenorhabditis elegans	40S ribosomal protein S8
19	AF	Small ribosomal subunit protein uS7	polymer	210	23189.7	1	UniProt (P49041) In PDB	Caenorhabditis elegans	40S ribosomal protein S5
20	AM	Small ribosomal subunit protein eS12	polymer	140	15092.3	1	UniProt (P49196) In PDB	Caenorhabditis elegans	40S ribosomal protein S12
21	AV	Small ribosomal subunit protein eS21	polymer	88	9689.0	1	UniProt (P49197) In PDB	Caenorhabditis elegans	40S ribosomal protein S21
22	AN	Small ribosomal subunit protein uS15	polymer	151	17354.5	1	UniProt (P51404) In PDB	Caenorhabditis elegans	40S ribosomal protein S13
23	AZ	Small ribosomal subunit protein eS25	polymer	117	12943.4	1	UniProt (P52821) In PDB	Caenorhabditis elegans	40S ribosomal protein S25
24	Ad	Small ribosomal subunit protein uS14	polymer	56	6568.7	1	UniProt (P90983) In PDB	Caenorhabditis elegans	40S ribosomal protein S29
25	AY	Small ribosomal subunit protein eS24	polymer	131	14908.9	1	UniProt (Q1XFY9) In PDB	Caenorhabditis elegans	40S ribosomal protein S24
26	AU	Small ribosomal subunit protein uS10	polymer	117	13258.5	1	UniProt (Q8WQA8) In PDB	Caenorhabditis elegans	40S ribosomal protein S20
27	AG	Small ribosomal subunit protein eS6	polymer	246	28201.0	1	UniProt (Q9NEN6) In PDB	Caenorhabditis elegans	40S ribosomal protein S6
28	Ab	Small ribosomal subunit protein eS27	polymer	83	9364.1	1	UniProt (Q9TXP0) In PDB	Caenorhabditis elegans	40S ribosomal protein S27
29	AP	Small ribosomal subunit protein uS19	polymer	151	17279.6	1	UniProt (Q9XVP0) In PDB	Caenorhabditis elegans	40S ribosomal protein S15
30	Ac	Small ribosomal subunit protein eS28	polymer	65	7449.6	1	UniProt (Q95Y04) In PDB	Caenorhabditis elegans	40S ribosomal protein S28
31	Ae	Ubiquitin-like domain-containing protein	polymer	130	14058.1	1	UniProt (Q18231) In PDB	Caenorhabditis elegans
32	AX	Small ribosomal subunit protein uS12	polymer	143	15909.6	1	UniProt (Q19877) In PDB	Caenorhabditis elegans	40S ribosomal protein S23
33	AL	Small ribosomal subunit protein uS17	polymer	155	17783.0	1	UniProt (Q20206) In PDB	Caenorhabditis elegans	40S ribosomal protein S11
34	AJ	Small ribosomal subunit protein uS4	polymer	189	22006.9	1	UniProt (Q20228) In PDB	Caenorhabditis elegans	40S ribosomal protein S9
35	AQ	Small ribosomal subunit protein uS9	polymer	144	16348.0	1	UniProt (Q22054) In PDB	Caenorhabditis elegans	40S ribosomal protein S16
36	AH	Small ribosomal subunit protein eS7	polymer	194	22101.0	1	UniProt (Q23312) In PDB	Caenorhabditis elegans	40S ribosomal protein S7
37	CF	Large ribosomal subunit protein uL30	polymer	244	28185.7	1	UniProt (O01802) In PDB	Caenorhabditis elegans	60S ribosomal protein L7
38	CS	Large ribosomal subunit protein eL20	polymer	180	21001.5	1	UniProt (O44480) In PDB	Caenorhabditis elegans	60S ribosomal protein L18a
39	CV	Large ribosomal subunit protein uL14	polymer	140	14979.6	1	UniProt (P48158) In PDB	Caenorhabditis elegans	60S ribosomal protein L23
40	CB	Large ribosomal subunit protein uL3	polymer	401	45759.3	1	UniProt (P50880) In PDB	Caenorhabditis elegans	60S ribosomal protein L3
41	CU	Large ribosomal subunit protein eL22	polymer	130	14979.4	1	UniProt (P52819) In PDB	Caenorhabditis elegans	60S ribosomal protein L22
42	CL	Large ribosomal subunit protein eL13	polymer	207	23809.7	1	UniProt (P91128) In PDB	Caenorhabditis elegans	60S ribosomal protein L13
43	CA	Large ribosomal subunit protein uL2	polymer	260	28267.9	1	UniProt (Q9XVF7) In PDB	Caenorhabditis elegans	60S ribosomal protein L8
44	CG	Large ribosomal subunit protein eL8	polymer	265	30240.5	1	UniProt (Q966C6) In PDB	Caenorhabditis elegans	60S ribosomal protein L7a
45	CI	Large ribosomal subunit protein uL16	polymer	214	24801.0	1	UniProt (Q09533) In PDB	Caenorhabditis elegans	60S ribosomal protein L10,QM protein homolog
46	CO	Large ribosomal subunit protein uL13	polymer	202	23044.3	1	UniProt (Q27389) In PDB	Caenorhabditis elegans	60S ribosomal protein L13a
47	CC	Large ribosomal subunit protein uL4	polymer	345	38735.2	1	UniProt (O02056) In PDB	Caenorhabditis elegans	60S ribosomal protein L4
48	Ch	Large ribosomal subunit protein uL29	polymer	123	14233.0	1	UniProt (P34662) In PDB	Caenorhabditis elegans	60S ribosomal protein L35
49	CE	Large ribosomal subunit protein eL6	polymer	217	24364.8	1	UniProt (P47991) In PDB	Caenorhabditis elegans	60S ribosomal protein L6
50	Co	Large ribosomal subunit protein eL42	polymer	105	12403.8	1	UniProt (P48166) In PDB	Caenorhabditis elegans	60S ribosomal protein L44,L41,Ribosomal protein rpl-36.A
51	Cf	Large ribosomal subunit protein eL33	polymer	124	13797.1	1	UniProt (P49180) In PDB	Caenorhabditis elegans	60S ribosomal protein L35a
52	Ci	Large ribosomal subunit protein eL36	polymer	104	11916.2	1	UniProt (P49181) In PDB	Caenorhabditis elegans	60S ribosomal protein L36
53	Cl	Large ribosomal subunit protein eL39	polymer	51	6347.8	1	UniProt (P52814) In PDB	Caenorhabditis elegans	60S ribosomal protein L39
54	CN	Large ribosomal subunit protein eL15	polymer	204	24187.2	1	UniProt (P91374) In PDB	Caenorhabditis elegans	60S ribosomal protein L15
55	Ca	Large ribosomal subunit protein uL15	polymer	145	16245.0	1	UniProt (Q9BKU5) In PDB	Caenorhabditis elegans	60S ribosomal protein L27a
56	Cp	Large ribosomal subunit protein eL43	polymer	91	10126.1	1	UniProt (Q9U2A8) In PDB	Caenorhabditis elegans	60S ribosomal protein L37a
57	CM	Large ribosomal subunit protein eL14	polymer	135	15384.3	1	UniProt (Q9XVE9) In PDB	Caenorhabditis elegans	60S ribosomal protein L14
58	Cc	Large ribosomal subunit protein eL30	polymer	115	12453.5	1	UniProt (Q9XWS4) In PDB	Caenorhabditis elegans	60S ribosomal protein L30
59	CH	Large ribosomal subunit protein uL6	polymer	189	21545.1	1	UniProt (Q95Y90) In PDB	Caenorhabditis elegans	60S ribosomal protein L9
60	CY	Large ribosomal subunit protein uL24	polymer	142	16117.9	1	UniProt (Q19869) In PDB	Caenorhabditis elegans	60S ribosomal protein L26
61	CR	Large ribosomal subunit protein eL19	polymer	198	23715.8	1	UniProt (O02639) In PDB	Caenorhabditis elegans	60S ribosomal protein L19
62	Cb	60S ribosomal protein L29	polymer	62	7249.5	1	UniProt (O45226) In PDB	Caenorhabditis elegans
63	CQ	Large ribosomal subunit protein eL18	polymer	188	21042.4	1	UniProt (O45946) In PDB	Caenorhabditis elegans	60S ribosomal protein L18
64	CT	Large ribosomal subunit protein eL21	polymer	161	18349.4	1	UniProt (P34334) In PDB	Caenorhabditis elegans	60S ribosomal protein L21
65	CD	Large ribosomal subunit protein uL18	polymer	293	33451.2	1	UniProt (P49405) In PDB	Caenorhabditis elegans	60S ribosomal protein L5
66	CZ	Large ribosomal subunit protein eL27	polymer	136	15765.9	1	UniProt (P91914) In PDB	Caenorhabditis elegans	60S ribosomal protein L27
67	CP	Large ribosomal subunit protein uL22	polymer	187	21560.8	1	UniProt (Q9BL19) In PDB	Caenorhabditis elegans	60S ribosomal protein L17
68	Cn	eL41	polymer	22	3012.9	1		Caenorhabditis elegans
69	Cg	Large ribosomal subunit protein eL34	polymer	110	12712.1	1	UniProt (A3QMC5) In PDB	Caenorhabditis elegans	60S ribosomal protein L34
70	Ck	Large ribosomal subunit protein eL38	polymer	70	8096.7	1	UniProt (O17570) In PDB	Caenorhabditis elegans	60S ribosomal protein L38
71	Cm	Ubiquitin-ribosomal protein eL40 fusion protein	polymer	128	14680.2	1	UniProt (P49632) In PDB	Caenorhabditis elegans	CEP52
72	Cd	Large ribosomal subunit protein eL31	polymer	122	14291.5	1	UniProt (Q9U332) In PDB	Caenorhabditis elegans	60S ribosomal protein L31
73	Ce	Large ribosomal subunit protein eL32	polymer	134	15554.3	1	UniProt (Q22716) In PDB	Caenorhabditis elegans	60S ribosomal protein L32
74	CW	Large ribosomal subunit protein eL24	polymer	159	17825.9	1	UniProt (O01868) In PDB	Caenorhabditis elegans	60S ribosomal protein L24
75	Cj	Ribosomal protein L37	polymer	92	10536.2	1	UniProt (O62388) In PDB	Caenorhabditis elegans
76	CJ	Large ribosomal subunit protein uL5B	polymer	196	22823.6	1	UniProt (Q19162) In PDB	Caenorhabditis elegans	60S ribosomal protein L11-2
77	CX	Large ribosomal subunit protein uL23B	polymer	146	16320.1	1	UniProt (Q20647) In PDB	Caenorhabditis elegans	60S ribosomal protein L23a 2
78	DA, DB	tRNA	polymer	76	24533.6	2		Caenorhabditis elegans
79	DC	mRNA	polymer	10	3016.7	1		Caenorhabditis elegans
80	A5	SPERMIDINE	non-polymer		145.2	1	Chemie (SPD)
81	A5	4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione	non-polymer		281.3	1	Chemie (3HE)

Contents of the asymmetric unit

Polymers	Number of chains	80
	Total formula weight	3187760.1
Non-Polymers*	Number of molecules	2
	Total formula weight	426.6
All*	Total formula weight	3188186.7

*Water molecules are not included.