9BH5
High-resolution C. elegans 80S ribosome structure - class 1
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AD | Small ribosomal subunit protein uS3 | polymer | 247 | 27356.8 | 1 | UniProt (P48152) In PDB | Caenorhabditis elegans | 40S ribosomal protein S3 |
2 | AB | Small ribosomal subunit protein eS1 | polymer | 257 | 29014.7 | 1 | UniProt (P48154) In PDB | Caenorhabditis elegans | 40S ribosomal protein S3a |
3 | AC | Small ribosomal subunit protein uS5 | polymer | 272 | 29011.5 | 1 | UniProt (P51403) In PDB | Caenorhabditis elegans | 40S ribosomal protein S2 |
4 | AE | Small ribosomal subunit protein eS4 | polymer | 259 | 29101.0 | 1 | UniProt (Q9N3X2) In PDB | Caenorhabditis elegans | 40S ribosomal protein S4 |
5 | A7 | 5S rRNA | polymer | 119 | 38254.6 | 1 | GenBank (6842) | Caenorhabditis elegans | |
6 | A8 | 5.8S rRNA | polymer | 153 | 49250.1 | 1 | GenBank (6830) | Caenorhabditis elegans | |
7 | B2 | 18S rRNA | polymer | 1754 | 565164.6 | 1 | GenBank (25167357) | Caenorhabditis elegans | |
8 | A5 | 28S rRNA | polymer | 3510 | 1132082.4 | 1 | Caenorhabditis elegans | ||
9 | AR | Small ribosomal subunit protein eS17 | polymer | 130 | 14966.2 | 1 | UniProt (O01692) In PDB | Caenorhabditis elegans | 40S ribosomal protein S17 |
10 | AK | Plectin/S10 N-terminal domain-containing protein | polymer | 149 | 16897.3 | 1 | UniProt (O01869) In PDB | Caenorhabditis elegans | |
11 | AW | Ribosomal Protein, Small subunit | polymer | 130 | 14758.4 | 1 | UniProt (O17218) In PDB | Caenorhabditis elegans | |
12 | AS | Small ribosomal subunit protein uS13 | polymer | 154 | 17809.8 | 1 | UniProt (O18240) In PDB | Caenorhabditis elegans | 40S ribosomal protein S18 |
13 | AT | Small ribosomal subunit protein eS19 | polymer | 146 | 16355.9 | 1 | UniProt (O18650) In PDB | Caenorhabditis elegans | 40S ribosomal protein S19 |
14 | Aa | Small ribosomal subunit protein eS26 | polymer | 117 | 13282.6 | 1 | UniProt (O45499) In PDB | Caenorhabditis elegans | 40S ribosomal protein S26 |
15 | Af | Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein | polymer | 163 | 18135.1 | 1 | UniProt (P37165) In PDB | Caenorhabditis elegans | |
16 | AA | Small ribosomal subunit protein uS2 | polymer | 276 | 30735.8 | 1 | UniProt (P46769) In PDB | Caenorhabditis elegans | 40S ribosomal protein SA |
17 | AO | Small ribosomal subunit protein uS11 | polymer | 152 | 16278.8 | 1 | UniProt (P48150) In PDB | Caenorhabditis elegans | 40S ribosomal protein S14 |
18 | AI | Small ribosomal subunit protein eS8 | polymer | 208 | 23800.4 | 1 | UniProt (P48156) In PDB | Caenorhabditis elegans | 40S ribosomal protein S8 |
19 | AF | Small ribosomal subunit protein uS7 | polymer | 210 | 23189.7 | 1 | UniProt (P49041) In PDB | Caenorhabditis elegans | 40S ribosomal protein S5 |
20 | AM | Small ribosomal subunit protein eS12 | polymer | 140 | 15092.3 | 1 | UniProt (P49196) In PDB | Caenorhabditis elegans | 40S ribosomal protein S12 |
21 | AV | Small ribosomal subunit protein eS21 | polymer | 88 | 9689.0 | 1 | UniProt (P49197) In PDB | Caenorhabditis elegans | 40S ribosomal protein S21 |
22 | AN | Small ribosomal subunit protein uS15 | polymer | 151 | 17354.5 | 1 | UniProt (P51404) In PDB | Caenorhabditis elegans | 40S ribosomal protein S13 |
23 | AZ | Small ribosomal subunit protein eS25 | polymer | 117 | 12943.4 | 1 | UniProt (P52821) In PDB | Caenorhabditis elegans | 40S ribosomal protein S25 |
24 | Ad | Small ribosomal subunit protein uS14 | polymer | 56 | 6568.7 | 1 | UniProt (P90983) In PDB | Caenorhabditis elegans | 40S ribosomal protein S29 |
25 | AY | Small ribosomal subunit protein eS24 | polymer | 131 | 14908.9 | 1 | UniProt (Q1XFY9) In PDB | Caenorhabditis elegans | 40S ribosomal protein S24 |
26 | AU | Small ribosomal subunit protein uS10 | polymer | 117 | 13258.5 | 1 | UniProt (Q8WQA8) In PDB | Caenorhabditis elegans | 40S ribosomal protein S20 |
27 | AG | Small ribosomal subunit protein eS6 | polymer | 246 | 28201.0 | 1 | UniProt (Q9NEN6) In PDB | Caenorhabditis elegans | 40S ribosomal protein S6 |
28 | Ab | Small ribosomal subunit protein eS27 | polymer | 83 | 9364.1 | 1 | UniProt (Q9TXP0) In PDB | Caenorhabditis elegans | 40S ribosomal protein S27 |
29 | AP | Small ribosomal subunit protein uS19 | polymer | 151 | 17279.6 | 1 | UniProt (Q9XVP0) In PDB | Caenorhabditis elegans | 40S ribosomal protein S15 |
30 | Ac | Small ribosomal subunit protein eS28 | polymer | 65 | 7449.6 | 1 | UniProt (Q95Y04) In PDB | Caenorhabditis elegans | 40S ribosomal protein S28 |
31 | Ae | Ubiquitin-like domain-containing protein | polymer | 130 | 14058.1 | 1 | UniProt (Q18231) In PDB | Caenorhabditis elegans | |
32 | AX | Small ribosomal subunit protein uS12 | polymer | 143 | 15909.6 | 1 | UniProt (Q19877) In PDB | Caenorhabditis elegans | 40S ribosomal protein S23 |
33 | AL | Small ribosomal subunit protein uS17 | polymer | 155 | 17783.0 | 1 | UniProt (Q20206) In PDB | Caenorhabditis elegans | 40S ribosomal protein S11 |
34 | AJ | Small ribosomal subunit protein uS4 | polymer | 189 | 22006.9 | 1 | UniProt (Q20228) In PDB | Caenorhabditis elegans | 40S ribosomal protein S9 |
35 | AQ | Small ribosomal subunit protein uS9 | polymer | 144 | 16348.0 | 1 | UniProt (Q22054) In PDB | Caenorhabditis elegans | 40S ribosomal protein S16 |
36 | AH | Small ribosomal subunit protein eS7 | polymer | 194 | 22101.0 | 1 | UniProt (Q23312) In PDB | Caenorhabditis elegans | 40S ribosomal protein S7 |
37 | CF | Large ribosomal subunit protein uL30 | polymer | 244 | 28185.7 | 1 | UniProt (O01802) In PDB | Caenorhabditis elegans | 60S ribosomal protein L7 |
38 | CS | Large ribosomal subunit protein eL20 | polymer | 180 | 21001.5 | 1 | UniProt (O44480) In PDB | Caenorhabditis elegans | 60S ribosomal protein L18a |
39 | CV | Large ribosomal subunit protein uL14 | polymer | 140 | 14979.6 | 1 | UniProt (P48158) In PDB | Caenorhabditis elegans | 60S ribosomal protein L23 |
40 | CB | Large ribosomal subunit protein uL3 | polymer | 401 | 45759.3 | 1 | UniProt (P50880) In PDB | Caenorhabditis elegans | 60S ribosomal protein L3 |
41 | CU | Large ribosomal subunit protein eL22 | polymer | 130 | 14979.4 | 1 | UniProt (P52819) In PDB | Caenorhabditis elegans | 60S ribosomal protein L22 |
42 | CL | Large ribosomal subunit protein eL13 | polymer | 207 | 23809.7 | 1 | UniProt (P91128) In PDB | Caenorhabditis elegans | 60S ribosomal protein L13 |
43 | CA | Large ribosomal subunit protein uL2 | polymer | 260 | 28267.9 | 1 | UniProt (Q9XVF7) In PDB | Caenorhabditis elegans | 60S ribosomal protein L8 |
44 | CG | Large ribosomal subunit protein eL8 | polymer | 265 | 30240.5 | 1 | UniProt (Q966C6) In PDB | Caenorhabditis elegans | 60S ribosomal protein L7a |
45 | CI | Large ribosomal subunit protein uL16 | polymer | 214 | 24801.0 | 1 | UniProt (Q09533) In PDB | Caenorhabditis elegans | 60S ribosomal protein L10,QM protein homolog |
46 | CO | Large ribosomal subunit protein uL13 | polymer | 202 | 23044.3 | 1 | UniProt (Q27389) In PDB | Caenorhabditis elegans | 60S ribosomal protein L13a |
47 | CC | Large ribosomal subunit protein uL4 | polymer | 345 | 38735.2 | 1 | UniProt (O02056) In PDB | Caenorhabditis elegans | 60S ribosomal protein L4 |
48 | Ch | Large ribosomal subunit protein uL29 | polymer | 123 | 14233.0 | 1 | UniProt (P34662) In PDB | Caenorhabditis elegans | 60S ribosomal protein L35 |
49 | CE | Large ribosomal subunit protein eL6 | polymer | 217 | 24364.8 | 1 | UniProt (P47991) In PDB | Caenorhabditis elegans | 60S ribosomal protein L6 |
50 | Co | Large ribosomal subunit protein eL42 | polymer | 105 | 12403.8 | 1 | UniProt (P48166) In PDB | Caenorhabditis elegans | 60S ribosomal protein L44,L41,Ribosomal protein rpl-36.A |
51 | Cf | Large ribosomal subunit protein eL33 | polymer | 124 | 13797.1 | 1 | UniProt (P49180) In PDB | Caenorhabditis elegans | 60S ribosomal protein L35a |
52 | Ci | Large ribosomal subunit protein eL36 | polymer | 104 | 11916.2 | 1 | UniProt (P49181) In PDB | Caenorhabditis elegans | 60S ribosomal protein L36 |
53 | Cl | Large ribosomal subunit protein eL39 | polymer | 51 | 6347.8 | 1 | UniProt (P52814) In PDB | Caenorhabditis elegans | 60S ribosomal protein L39 |
54 | CN | Large ribosomal subunit protein eL15 | polymer | 204 | 24187.2 | 1 | UniProt (P91374) In PDB | Caenorhabditis elegans | 60S ribosomal protein L15 |
55 | Ca | Large ribosomal subunit protein uL15 | polymer | 145 | 16245.0 | 1 | UniProt (Q9BKU5) In PDB | Caenorhabditis elegans | 60S ribosomal protein L27a |
56 | Cp | Large ribosomal subunit protein eL43 | polymer | 91 | 10126.1 | 1 | UniProt (Q9U2A8) In PDB | Caenorhabditis elegans | 60S ribosomal protein L37a |
57 | CM | Large ribosomal subunit protein eL14 | polymer | 135 | 15384.3 | 1 | UniProt (Q9XVE9) In PDB | Caenorhabditis elegans | 60S ribosomal protein L14 |
58 | Cc | Large ribosomal subunit protein eL30 | polymer | 115 | 12453.5 | 1 | UniProt (Q9XWS4) In PDB | Caenorhabditis elegans | 60S ribosomal protein L30 |
59 | CH | Large ribosomal subunit protein uL6 | polymer | 189 | 21545.1 | 1 | UniProt (Q95Y90) In PDB | Caenorhabditis elegans | 60S ribosomal protein L9 |
60 | CY | Large ribosomal subunit protein uL24 | polymer | 142 | 16117.9 | 1 | UniProt (Q19869) In PDB | Caenorhabditis elegans | 60S ribosomal protein L26 |
61 | CR | Large ribosomal subunit protein eL19 | polymer | 198 | 23715.8 | 1 | UniProt (O02639) In PDB | Caenorhabditis elegans | 60S ribosomal protein L19 |
62 | Cb | 60S ribosomal protein L29 | polymer | 62 | 7249.5 | 1 | UniProt (O45226) In PDB | Caenorhabditis elegans | |
63 | CQ | Large ribosomal subunit protein eL18 | polymer | 188 | 21042.4 | 1 | UniProt (O45946) In PDB | Caenorhabditis elegans | 60S ribosomal protein L18 |
64 | CT | Large ribosomal subunit protein eL21 | polymer | 161 | 18349.4 | 1 | UniProt (P34334) In PDB | Caenorhabditis elegans | 60S ribosomal protein L21 |
65 | CD | Large ribosomal subunit protein uL18 | polymer | 293 | 33451.2 | 1 | UniProt (P49405) In PDB | Caenorhabditis elegans | 60S ribosomal protein L5 |
66 | CZ | Large ribosomal subunit protein eL27 | polymer | 136 | 15765.9 | 1 | UniProt (P91914) In PDB | Caenorhabditis elegans | 60S ribosomal protein L27 |
67 | CP | Large ribosomal subunit protein uL22 | polymer | 187 | 21560.8 | 1 | UniProt (Q9BL19) In PDB | Caenorhabditis elegans | 60S ribosomal protein L17 |
68 | Cn | eL41 | polymer | 22 | 3012.9 | 1 | Caenorhabditis elegans | ||
69 | Cg | Large ribosomal subunit protein eL34 | polymer | 110 | 12712.1 | 1 | UniProt (A3QMC5) In PDB | Caenorhabditis elegans | 60S ribosomal protein L34 |
70 | Ck | Large ribosomal subunit protein eL38 | polymer | 70 | 8096.7 | 1 | UniProt (O17570) In PDB | Caenorhabditis elegans | 60S ribosomal protein L38 |
71 | Cm | Ubiquitin-ribosomal protein eL40 fusion protein | polymer | 128 | 14680.2 | 1 | UniProt (P49632) In PDB | Caenorhabditis elegans | CEP52 |
72 | Cd | Large ribosomal subunit protein eL31 | polymer | 122 | 14291.5 | 1 | UniProt (Q9U332) In PDB | Caenorhabditis elegans | 60S ribosomal protein L31 |
73 | Ce | Large ribosomal subunit protein eL32 | polymer | 134 | 15554.3 | 1 | UniProt (Q22716) In PDB | Caenorhabditis elegans | 60S ribosomal protein L32 |
74 | CW | Large ribosomal subunit protein eL24 | polymer | 159 | 17825.9 | 1 | UniProt (O01868) In PDB | Caenorhabditis elegans | 60S ribosomal protein L24 |
75 | Cj | Ribosomal protein L37 | polymer | 92 | 10536.2 | 1 | UniProt (O62388) In PDB | Caenorhabditis elegans | |
76 | CJ | Large ribosomal subunit protein uL5B | polymer | 196 | 22823.6 | 1 | UniProt (Q19162) In PDB | Caenorhabditis elegans | 60S ribosomal protein L11-2 |
77 | CX | Large ribosomal subunit protein uL23B | polymer | 146 | 16320.1 | 1 | UniProt (Q20647) In PDB | Caenorhabditis elegans | 60S ribosomal protein L23a 2 |
78 | DA, DB | tRNA | polymer | 76 | 24533.6 | 2 | Caenorhabditis elegans | ||
79 | DC | mRNA | polymer | 10 | 3016.7 | 1 | Caenorhabditis elegans | ||
80 | A5 | SPERMIDINE | non-polymer | 145.2 | 1 | Chemie (SPD) | |||
81 | A5 | 4-{(2R)-2-[(1S,3S,5S)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione | non-polymer | 281.3 | 1 | Chemie (3HE) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 80 |
Total formula weight | 3187760.1 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 426.6 | |
All* | Total formula weight | 3188186.7 |