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9BDL

80S ribosome with angiogenin

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A18S18S rRNApolymer1869602777.91Oryctolagus cuniculus
2A28S28S rRNApolymer36011166972.31Oryctolagus cuniculus
3A58S5.8S rRNApolymer15650143.61Oryctolagus cuniculus
4A5S5S rRNApolymer12038691.91GenBank (X06789.1)Oryctolagus cuniculus (rabbit)
5AL0260S ribosomal protein L8polymer24826998.61UniProt (G1TT27)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Oryctolagus cuniculus (rabbit)
6AL0360S ribosomal protein L3polymer39445119.81UniProt (G1TL06)
Pfam (PF00297)
In PDB
Oryctolagus cuniculus (rabbit)
7AL0460S ribosomal protein L4polymer36241101.41UniProt (A0A5F9DCT1)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Oryctolagus cuniculus (rabbit)
8AL05Large ribosomal subunit protein uL18polymer29334077.41UniProt (P19949)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L5
9AL0660S ribosomal protein L6polymer25128818.31UniProt (G1SKF7)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Oryctolagus cuniculus (rabbit)
10AL0760S ribosomal protein L7polymer22526658.81UniProt (G1SV32)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Oryctolagus cuniculus (rabbit)
11AL08Large ribosomal subunit protein eL8polymer24027351.41UniProt (G1STW0)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L7a
12AL0960S ribosomal protein L9polymer19021627.21UniProt (G1SWI6)
Pfam (PF00347)
In PDB
Oryctolagus cuniculus (rabbit)
13AL10Ribosomal protein L10polymer21324511.91UniProt (B7NZQ2)
Pfam (PF00252)
In PDB
Oryctolagus cuniculus (rabbit)Ribosomal protein L10 (Predicted)
14AL1160S ribosomal protein L11polymer17019399.51UniProt (G1TUB8)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Oryctolagus cuniculus (rabbit)
15AL13Large ribosomal subunit protein eL13polymer21024200.51UniProt (G1TKB3)
Pfam (PF01294)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L13
16AL14Large ribosomal subunit protein eL14polymer13816217.41UniProt (G1SZ12)
Pfam (PF01929)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L14
17AL1560S ribosomal protein L15polymer20324076.11UniProt (G1T0C1)
Pfam (PF00827)
In PDB
Oryctolagus cuniculus (rabbit)
18AL16Large ribosomal subunit protein uL13polymer19923144.91UniProt (G1TVS8)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L13a
19AL1760S ribosomal protein L17polymer15317758.71UniProt (G1SCJ6)
Pfam (PF00237)
In PDB
Oryctolagus cuniculus (rabbit)
20AL18Large ribosomal subunit protein eL18polymer18721568.51UniProt (G1TFE0)
Pfam (PF17135)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L18
21AL1960S ribosomal protein L19polymer18021613.01UniProt (G1TYL6)
Pfam (PF01280)
In PDB
Oryctolagus cuniculus (rabbit)
22AL2060S ribosomal protein L18apolymer17620827.61UniProt (G1TTY7)
Pfam (PF01775)
In PDB
Oryctolagus cuniculus (rabbit)
23AL2160S ribosomal protein L21polymer15918478.81UniProt (G1SHQ2)
Pfam (PF01157)
In PDB
Oryctolagus cuniculus (rabbit)
24AL22Large ribosomal subunit protein eL22polymer9911495.31UniProt (G1TSG1)
Pfam (PF01776)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L22
25AL2360S ribosomal protein L23polymer13113972.41UniProt (G1T6D1)
Pfam (PF00238)
In PDB
Oryctolagus cuniculus (rabbit)
26AL24Ribosomal protein L24polymer12114131.51UniProt (G1SE28)
Pfam (PF01246)
In PDB
Oryctolagus cuniculus (rabbit)
27AL25Large ribosomal subunit protein uL23polymer11813727.21UniProt (G1SE76)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L23a
28AL2660S ribosomal protein L26polymer13415891.81UniProt (G1SQH0)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Oryctolagus cuniculus (rabbit)
29AL2760S ribosomal protein L27polymer13515704.61UniProt (G1TXF6)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Oryctolagus cuniculus (rabbit)
30AL2860S ribosomal protein L27apolymer14716489.41UniProt (G1SNY0)
Pfam (PF00828)
In PDB
Oryctolagus cuniculus (rabbit)
31AL29Large ribosomal subunit protein eL29polymer24526708.71UniProt (G1SGR6)
Pfam (PF01779)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L29
32AL3060S ribosomal protein L30polymer9810914.81UniProt (G1TDL2)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
33AL3160S ribosomal protein L31polymer10712635.71UniProt (G1SHG0)
Pfam (PF01198)
In PDB
Oryctolagus cuniculus (rabbit)
34AL32Large ribosomal subunit protein eL32polymer12815022.01UniProt (G1TUN8)
Pfam (PF01655)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L32
35AL3360S ribosomal protein L35apolymer10912449.61UniProt (G1SF08)
Pfam (PF01247)
In PDB
Oryctolagus cuniculus (rabbit)
36AL3460S ribosomal protein L34polymer11412994.61UniProt (G1TXG5)
Pfam (PF01199)
In PDB
Oryctolagus cuniculus (rabbit)
37AL3560S ribosomal protein L35polymer12214435.41UniProt (G1SIT5)
Pfam (PF00831)
In PDB
Oryctolagus cuniculus (rabbit)
38AL3660S ribosomal protein L36polymer10211888.41UniProt (G1TTQ5)
Pfam (PF01158)
In PDB
Oryctolagus cuniculus (rabbit)
39AL3760S ribosomal protein L37polymer8610090.91UniProt (U3KPD5)
Pfam (PF01907)
In PDB
Oryctolagus cuniculus (rabbit)
40AL38Large ribosomal subunit protein eL38polymer698107.81UniProt (G1U001)
Pfam (PF01781)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L38
41AL3960S ribosomal protein L39polymer506324.61UniProt (G1TTN1)
Pfam (PF00832)
In PDB
Oryctolagus cuniculus (rabbit)
42AL40Large ribosomal subunit protein eL40polymer526199.61UniProt (P0DXC2)
In PDB
Oryctolagus cuniculus (rabbit)60S ribosomal protein L40
43AL41eL41polymer253473.51UniProt (A0A087WNH4)
Pfam (PF05162)
In PDB
Oryctolagus cuniculus (rabbit)60s ribosomal protein l41
44AL42eL42polymer10412198.61UniProt (A0A5F9D391)
Pfam (PF00935)
In PDB
Oryctolagus cuniculus (rabbit)
45AL4360S ribosomal protein L37apolymer9110168.21UniProt (G1SY53)
Pfam (PF01780)
In PDB
Oryctolagus cuniculus (rabbit)
46ALNW60S ribosomal protein L28polymer12414220.71UniProt (G1U7L1)
Pfam (PF01778)
In PDB
Oryctolagus cuniculus (rabbit)
47ANGAngiogeninpolymer14716576.11UniProt (P03950)
Pfam (PF00074)
In PDB
Homo sapiens (human)Ribonuclease 5,RNase 5
48ARACReceptor of activated protein C kinase 1polymer31334669.11UniProt (G1SJB4)
Pfam (PF00400)
In PDB
Oryctolagus cuniculus (rabbit)
49AS0040S_SA_C domain-containing proteinpolymer21724361.91UniProt (G1TJH8)
Pfam (PF00318)
In PDB
Oryctolagus cuniculus (rabbit)
50AS0140S ribosomal protein S3apolymer21324759.11UniProt (G1SS70)
Pfam (PF01015)
In PDB
Oryctolagus cuniculus (rabbit)
51AS0240S ribosomal protein S2polymer22124441.81UniProt (O18789)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Oryctolagus cuniculus (rabbit)
52AS0340S ribosomal protein S3polymer22825215.61UniProt (G1TNM3)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Oryctolagus cuniculus (rabbit)
53AS0440S ribosomal protein S4polymer26229523.71UniProt (G1TA47)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Oryctolagus cuniculus (rabbit)
54AS05Ribosomal protein S5polymer19121525.91UniProt (G1TFM5)
Pfam (PF00177)
In PDB
Oryctolagus cuniculus (rabbit)
55AS0640S ribosomal protein S6polymer23727471.51UniProt (G1TM55)
Pfam (PF01092)
In PDB
Oryctolagus cuniculus (rabbit)
56AS07Small ribosomal subunit protein eS7polymer18921629.31UniProt (G1SVB0)
In PDB
Oryctolagus cuniculus (rabbit)40S ribosomal protein S7
57AS0840S ribosomal protein S8polymer20624003.01UniProt (G1TJW1)
Pfam (PF01201)
In PDB
Oryctolagus cuniculus (rabbit)
58AS0940S ribosomal protein S9polymer18521649.61UniProt (B7NZS8)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Oryctolagus cuniculus (rabbit)
59AS1040S ribosomal protein S10polymer9611529.71UniProt (G1TPV3)
Pfam (PF03501)
In PDB
Oryctolagus cuniculus (rabbit)
60AS1140S ribosomal protein S11polymer15117586.81UniProt (G1TRM4)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Oryctolagus cuniculus (rabbit)
61AS1240S ribosomal protein S12polymer11713048.21UniProt (G1SFR8)
Pfam (PF01248)
In PDB
Oryctolagus cuniculus (rabbit)
62AS1340S ribosomal protein S13polymer14917057.11UniProt (G1SP51)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Oryctolagus cuniculus (rabbit)
63AS14Small ribosomal subunit protein uS11polymer13514431.51UniProt (G1T1F0)
Pfam (PF00411)
In PDB
Oryctolagus cuniculus (rabbit)40S ribosomal protein S14
64AS1540S ribosomal protein S15polymer12014246.91UniProt (G1U0Q2)
Pfam (PF00203)
In PDB
Oryctolagus cuniculus (rabbit)
65AS16Small ribosomal subunit protein uS9polymer14216032.81UniProt (G1SGX4)
Pfam (PF00380)
In PDB
Oryctolagus cuniculus (rabbit)40S ribosomal protein S16
66AS1740S ribosomal protein S17polymer13215250.71UniProt (G1TU13)
Pfam (PF00833)
In PDB
Oryctolagus cuniculus (rabbit)
67AS1840S ribosomal protein S18polymer14416898.61UniProt (G1TPG3)
Pfam (PF00416)
In PDB
Oryctolagus cuniculus (rabbit)
68AS19Small ribosomal subunit protein eS19polymer14115611.01UniProt (G1TN62)
Pfam (PF01090)
In PDB
Oryctolagus cuniculus (rabbit)40S ribosomal protein S19
69AS2040S ribosomal protein S20polymer10011395.51UniProt (G1SIZ2)
Pfam (PF00338)
In PDB
Oryctolagus cuniculus (rabbit)
70AS21eS21polymer839124.41UniProt (G1TM82)
Pfam (PF01249)
In PDB
Oryctolagus cuniculus (rabbit)40S ribosomal protein S21
71AS2240S ribosomal protein S15apolymer12914734.41UniProt (G1TG89)
Pfam (PF00410)
In PDB
Oryctolagus cuniculus (rabbit)
72AS2340S ribosomal protein S23polymer14115626.41UniProt (G1SZ47)
Pfam (PF00164)
In PDB
Oryctolagus cuniculus (rabbit)
73AS2440S ribosomal protein S24polymer12414432.11UniProt (G1T3D8)
Pfam (PF01282)
In PDB
Oryctolagus cuniculus (rabbit)
74AS2540S ribosomal protein S25polymer758526.11UniProt (G1TDB3)
Pfam (PF03297)
In PDB
Oryctolagus cuniculus (rabbit)
75AS26eS26polymer10111645.81UniProt (G1TFE8)
Pfam (PF01283)
In PDB
Oryctolagus cuniculus (rabbit)40S ribosomal protein S26
76AS2740S ribosomal protein S27polymer839349.01UniProt (G1TZ76)
Pfam (PF01667)
In PDB
Oryctolagus cuniculus (rabbit)
77AS2840S ribosomal protein S28polymer627007.11UniProt (G1TIB4)
Pfam (PF01200)
In PDB
Oryctolagus cuniculus (rabbit)
78AS2940S ribosomal protein S29polymer556559.61UniProt (G1U7M4)
Pfam (PF00253)
In PDB
Oryctolagus cuniculus (rabbit)
79AS3040S ribosomal protein S30polymer556317.51UniProt (G1T8A2)
Pfam (PF04758)
In PDB
Oryctolagus cuniculus (rabbit)
80ETRN, PTRNtRNAfMetpolymer7724802.82GenBank (1275521620)Escherichia coli K-12
81MRNAModel mRNApolymer288591.21Oryctolagus cuniculus
Sequence modifications
A5S: 1 - 120 (GenBank: X06789.1)
PDBExternal DatabaseDetails
U 2N 2conflict
C 36N 36conflict
U 102N 102conflict
U 112N 112conflict
U 114N 114conflict
U 119C 119conflict
U 120N 120conflict
AL08: 80 - 319 (UniProt: G1STW0)
PDBExternal DatabaseDetails
Gly 244Cys 244conflict
AL13: 2 - 211 (UniProt: G1TKB3)
PDBExternal DatabaseDetails
Arg 74His 74conflict
Arg 190His 190conflict
AL18: 2 - 188 (UniProt: G1TFE0)
PDBExternal DatabaseDetails
Asp 4Asn 4conflict
Arg 14Trp 14conflict
Met 53Leu 53conflict
Arg 58Trp 58conflict
Arg 75Gln 75conflict
Ala 80Pro 80conflict
Val 86Ile 86conflict
Arg 104His 104conflict
Arg 110Cys 110conflict
Val 137Gly 137conflict
Gly 157Arg 157conflict
Arg 181Trp 181conflict
AL19: 2 - 181 (UniProt: G1TYL6)
PDBExternal DatabaseDetails
Arg 38His 38conflict
Arg 151His 151conflict
AL20: 1 - 175 (UniProt: G1TTY7)
PDBExternal DatabaseDetails
Met 1Thr 1conflict
Pro 18-insertion
Thr 19-insertion
Pro 20Ser 18conflict
Cys 22Ser 20conflict
Arg 23Pro 21conflict
Thr 24Ala 22conflict
Ser 49Leu 47conflict
Gln 50Glu 48conflict
Arg 95His 93conflict
Thr 101Ile 99conflict
Thr 102Met 100conflict
Gly 104Ser 102conflict
Ile 126Val 124conflict
Ile 132Met 130conflict
Ser 135Ala 133conflict
Lys 136Arg 134conflict
Arg 138Pro 136conflict
Lys 149Arg 147conflict
Lys 151Arg 149conflict
Thr 168Tyr 166conflict
Thr 169Ala 167conflict
Phe 176-insertion
AL22: 17 - 115 (UniProt: G1TSG1)
PDBExternal DatabaseDetails
Leu 18Val 18conflict
Gly 32Arg 32conflict
Ala 36Glu 36conflict
Phe 39Ser 39conflict
Gly 54Arg 54conflict
Val 60Ala 60conflict
Ser 62Thr 62conflict
Leu 63Ile 63conflict
Arg 97His 97conflict
Thr 106Ser 106conflict
AL32: 2 - 129 (UniProt: G1TUN8)
PDBExternal DatabaseDetails
Ala 3Ser 3conflict
Val 13Ile 13conflict
Arg 16Trp 16conflict
Asn 81Ser 81conflict
Glu 98Lys 98conflict
Arg 108Cys 108conflict
Ala 115Val 115conflict
AL38: 2 - 70 (UniProt: G1U001)
PDBExternal DatabaseDetails
Lys 24Asn 24conflict
AS08: 2 - 207 (UniProt: G1TJW1)
PDBExternal DatabaseDetails
Arg 47Gly 47conflict
AS19: 3 - 143 (UniProt: G1TN62)
PDBExternal DatabaseDetails
Gly 119Trp 119conflict
AS21: 1 - 83 (UniProt: G1TM82)
PDBExternal DatabaseDetails
Asn 3Ser 3conflict
Asp 4Asn 4conflict
Gln 33Pro 33conflict
Phe 50Ser 50conflict
Ala 75Ser 75conflict
Asp 76His 76conflict
Lys 81Gln 81conflict
AS26: 2 - 102 (UniProt: G1TFE8)
PDBExternal DatabaseDetails
Arg 28Cys 28conflict
Ala 56Val 56conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight3251815.1
All*Total formula weight3251815.1
*Water molecules are not included.

224201

PDB entries from 2024-08-28

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