9BDE
Middle Region of Apolipoprotein B 100 bound to Low Density Lipoprotein Receptor
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | Legobody 8D3 Fab Heavy Chain | polymer | 234 | 25252.2 | 1 | Mus musculus | ||
| 2 | B (A) | Apolipoprotein B 100 | polymer | 4563 | 516167.5 | 1 | UniProt (P04114) Pfam (PF01347) Pfam (PF09172) Pfam (PF06448) Pfam (PF12491) | Homo sapiens (human) | Apo B-100 |
| 3 | C (L) | Legobody 8D3 Fab light chain | polymer | 219 | 24095.9 | 1 | Mus musculus | ||
| 4 | D (B) | Maltose/maltodextrin-binding periplasmic protein,Immunoglobulin G-binding protein A,Immunoglobulin G-binding protein G | polymer | 545 | 59233.2 | 1 | UniProt (P0AEX9) UniProt (P02976) UniProt (P19909) Pfam (PF01547) Pfam (PF02216) | Escherichia coli | MMBP,Maltodextrin-binding protein,Maltose-binding protein,MBP,IgG-binding protein A,Staphylococcal protein A,SpA,IgG-binding protein G |
| 5 | E (N) | ApoB100 nanobody 4 | polymer | 131 | 14322.9 | 1 | Camelus bactrianus | ||
| 6 | F (R) | Low-density lipoprotein receptor | polymer | 860 | 95477.0 | 1 | UniProt (P01130) Pfam (PF00057) Pfam (PF00058) Pfam (PF14670) | Homo sapiens (human) | LDL receptor |
| 7 | G, H, I, J, K (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 5 | Chemie (NAG) PubChem (24139) | |||
| 8 | L, M, N, O, P... (R) | CALCIUM ION | non-polymer | 40.1 | 7 | Chemie (CA) PubChem (271) |
Sequence modifications
B: 2 - 359 (UniProt: P0AEX9)
B: 360 - 409 (UniProt: P02976)
B: 419 - 467 (UniProt: P02976)
B: 479 - 536 (UniProt: P19909)
| PDB | External Database | Details |
|---|---|---|
| Met 1 | - | initiating methionine |
| PDB | External Database | Details |
|---|---|---|
| Ala 361 | Gln 279 | conflict |
| Leu 362 | Asn 280 | conflict |
| Ala 365 | Tyr 283 | conflict |
| Gln 366 | Glu 284 | conflict |
| Ile 369 | His 287 | conflict |
| Met 370 | Leu 288 | conflict |
| Glu 404 | Asp 322 | conflict |
| His 405 | Ala 323 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Gly 410 | - | linker |
| Gly 411 | - | linker |
| Ser 412 | - | linker |
| Gly 413 | - | linker |
| Gly 414 | - | linker |
| Ala 415 | - | linker |
| Gly 416 | - | linker |
| Ser 417 | - | linker |
| Gly 418 | - | linker |
| Gly 468 | - | linker |
| Gly 469 | - | linker |
| Gly 470 | - | linker |
| Ser 471 | - | linker |
| Gly 472 | - | linker |
| Gly 473 | - | linker |
| Gly 474 | - | linker |
| Ser 475 | - | linker |
| Gly 476 | - | linker |
| Gly 477 | - | linker |
| Ser 478 | - | linker |
| PDB | External Database | Details |
|---|---|---|
| Gly 537 | - | expression tag |
| Ser 538 | - | expression tag |
| Gly 539 | - | expression tag |
| His 540 | - | expression tag |
| His 541 | - | expression tag |
| His 542 | - | expression tag |
| His 543 | - | expression tag |
| His 544 | - | expression tag |
| His 545 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 734548.7 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 1386.6 | |
| All* | Total formula weight | 735935.3 |
