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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

9B8B

RM038 Fab in complex with Apex-GT 6.2 trimer and RM20A3 Fab

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(H)		RM038 fragment antigen binding heavy chainpolymer13414848.41Macaca mulatta
2B
(L)		RM038 fragment antigen binding light chainpolymer11312335.71Macaca mulatta
3C, E, H
(G, J, N)		RM20A3 fragment antigen binding light chainpolymer10911540.63Macaca mulatta
4D, F, G
(I, K, M)		RM20A3 fragment antigen binding heavy chainpolymer12413424.03Macaca mulatta
5I, K, M
(A, C, D)		Envelope glycoprotein gp160polymer50456216.13UniProt (Q2N0S6)
Pfam (PF00516)		Human immunodeficiency virus 1Env polyprotein
6J, L, N
(B, E, F)		Transmembrane protein gp41polymer15317134.33UniProt (Q2N0S6)
Pfam (PF00517)		Human immunodeficiency virus 1TM, Glycoprotein 41, gp41
7O, Q, R, T, U...
(O, Q, R, T, U...)		2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.48In PDB
GlyTouCan (G42666HT)
8P, S, X
(P, S, X)		beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.53In PDB
GlyTouCan (G15407YE)
9AA, AB, BA, BB, CA...
(A, C, E, D, B...)		2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.249Chemie (NAG)
Sequence modifications
A, C, D: 31 - 508 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Met 0-initiating methionine
Gly 1-expression tag
Ile 2-expression tag
Leu 3-expression tag
Pro 4-expression tag
Ser 5-expression tag
Pro 6-expression tag
Gly 7-expression tag
Met 8-expression tag
Pro 9-expression tag
Ala 10-expression tag
Leu 11-expression tag
Leu 12-expression tag
Ser 13-expression tag
Leu 14-expression tag
Val 15-expression tag
Ser 16-expression tag
Leu 17-expression tag
Leu 18-expression tag
Ser 19-expression tag
Val 20-expression tag
Leu 21-expression tag
Leu 22-expression tag
Met 23-expression tag
Gly 24-expression tag
Cys 25-expression tag
Val 26-expression tag
Ala 27-expression tag
Glu 28-expression tag
Thr 29-expression tag
Gly 30-expression tag
Ser 76Pro 75conflict
Glu 106Thr 105conflict
Gly 128Thr 127conflict
Ala 161Met 152conflict
Asn 167Asp 158conflict
Arg 169Lys 160conflict
Ile 181Val 172conflict
Pro 183Gln 174conflict
Met 184Ile 175conflict
Val 185Asn 176conflict
Asp 186Glu 177conflict
Leu 187Asn 178conflict
Trp 188Gln 179conflict
Thr 189Gly 180conflict
-Arg 182deletion
-Ser 183deletion
-Asn 184deletion
-Asn 185deletion
-Ser 186deletion
-Asn 187deletion
-Lys 188deletion
-Glu 189deletion
Ser 195Asn 194conflict
Gln 240Pro 239conflict
Asn 241Ser 240conflict
Ile 271Met 270conflict
Leu 288Phe 287conflict
Ser 291Pro 290conflict
Val 304Arg 303conflict
Tyr 318Ala 316conflict
Asn 332Thr 330conflict
Gln 363Asn 361conflict
Cys 501Ala 498conflict
Arg 509-expression tag
Arg 510-expression tag
Arg 511-expression tag
Arg 512-expression tag
Arg 513-expression tag
B, E, F: 512 - 664 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Ser 519Phe 516conflict
Pro 559Ile 556conflict
Pro 561Ala 558conflict
Asp 568Leu 565conflict
His 570Val 567conflict
His 585Arg 582conflict
Cys 605Thr 602conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains14
Total formula weight322129.4
BranchedNumber of molecules11
Total formula weight5154.8
Non-Polymers*Number of molecules49
Total formula weight10839.2
All*Total formula weight338123.4
*Water molecules are not included.

246905

PDB entries from 2025-12-31

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