9B2C
Structure of the Porcine deltacoronavirus (PDCoV) receptor-binding domain bound to the PD33 antibody Fab fragment and the Kappa light chain nanobody
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Spike glycoprotein | polymer | 163 | 17882.5 | 1 | UniProt (A0A1S6L971) Pfam (PF01600) | Porcine deltacoronavirus | Spike protein |
| 2 | B (L) | PD33 Fab kappa light chain | polymer | 219 | 24164.9 | 1 | Mus sp. | ||
| 3 | C (N) | Kappa light chain nanobody | polymer | 159 | 17252.1 | 1 | Lama glama (llama) | ||
| 4 | D (H) | PD33 Fab heavy chain | polymer | 222 | 23680.4 | 1 | Mus sp. | ||
| 5 | E (B) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 6 | F (A) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) |
Sequence modifications
A: 303 - 416 (UniProt: A0A1S6L971)
| PDB | External Database | Details |
|---|---|---|
| Met 271 | - | expression tag |
| Gly 272 | - | expression tag |
| Ile 273 | - | expression tag |
| Leu 274 | - | expression tag |
| Pro 275 | - | expression tag |
| Ser 276 | - | expression tag |
| Pro 277 | - | expression tag |
| Gly 278 | - | expression tag |
| Met 279 | - | expression tag |
| Pro 280 | - | expression tag |
| Ala 281 | - | expression tag |
| Leu 282 | - | expression tag |
| Leu 283 | - | expression tag |
| Ser 284 | - | expression tag |
| Leu 285 | - | expression tag |
| Val 286 | - | expression tag |
| Ser 287 | - | expression tag |
| Leu 288 | - | expression tag |
| Leu 289 | - | expression tag |
| Ser 290 | - | expression tag |
| Val 291 | - | expression tag |
| Leu 292 | - | expression tag |
| Leu 293 | - | expression tag |
| Met 294 | - | expression tag |
| Gly 295 | - | expression tag |
| Cys 296 | - | expression tag |
| Val 297 | - | expression tag |
| Ala 298 | - | expression tag |
| Glu 299 | - | expression tag |
| Thr 300 | - | expression tag |
| Gly 301 | - | expression tag |
| Thr 302 | - | expression tag |
| Leu 417 | - | expression tag |
| Val 418 | - | expression tag |
| Pro 419 | - | expression tag |
| Arg 420 | - | expression tag |
| Gly 421 | - | expression tag |
| Ser 422 | - | expression tag |
| Gly 423 | - | expression tag |
| Gly 424 | - | expression tag |
| Ser 425 | - | expression tag |
| His 426 | - | expression tag |
| His 427 | - | expression tag |
| His 428 | - | expression tag |
| His 429 | - | expression tag |
| His 430 | - | expression tag |
| His 431 | - | expression tag |
| His 432 | - | expression tag |
| His 433 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 82979.9 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 586.5 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 221.2 | |
| All* | Total formula weight | 83787.6 |
