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9B0S

In situ human top-top di-ribosome structure (Composite map)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(cH)
Endothelial differentiation-related factor 1polymer12513780.71UniProt (O60869)
Pfam (PF08523)
Pfam (PF01381)
Homo sapiens (human)EDF-1,Multiprotein-bridging factor 1,MBF1
2B, IC
(sE, SE)
Small ribosomal subunit protein eS4, X isoformpolymer26229523.72UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (human)40S ribosomal protein S4,SCR10,Single copy abundant mRNA protein
3C, JC
(sI, SI)
40S ribosomal protein S8polymer20624003.02UniProt (P62241)
Pfam (PF01201)
Homo sapiens (human)Small ribosomal subunit protein eS8
4D, KC
(sL, SL)
40S ribosomal protein S11polymer15317786.02UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (human)Small ribosomal subunit protein uS17
5E, LC
(sX, SX)
40S ribosomal protein S23polymer14115626.42UniProt (P62266)
Pfam (PF00164)
Homo sapiens (human)Small ribosomal subunit protein uS12
6F, MC
(sG, SG)
40S ribosomal protein S6polymer23727471.52UniProt (P62753)
Pfam (PF01092)
Homo sapiens (human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
7G, NC
(sJ, SJ)
40S ribosomal protein S9polymer18521649.62UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (human)Small ribosomal subunit protein uS4
8H, OC
(sY, SY)
40S ribosomal protein S24polymer13115203.02UniProt (P62847)
Pfam (PF01282)
Homo sapiens (human)Small ribosomal subunit protein eS24
9I, PC
(se, Se)
Small ribosomal subunit protein eS30polymer586539.82UniProt (P62861)
Pfam (PF04758)
Homo sapiens (human)40S ribosomal protein S30
10J, QC
(sA, SA)
40S ribosomal protein SApolymer22124774.42UniProt (P08865)
Pfam (PF00318)
Homo sapiens (human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
11K, RC
(sB, SB)
40S ribosomal protein S3apolymer21424888.32UniProt (P61247)
Pfam (PF01015)
Homo sapiens (human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
12L, SC
(sH, SH)
Small ribosomal subunit protein eS7polymer18921603.22UniProt (P62081)
Pfam (PF01251)
Homo sapiens (human)40S ribosomal protein S7
13M, TC
(sV, SV)
40S ribosomal protein S21polymer839124.42UniProt (P63220)
Pfam (PF01249)
Homo sapiens (human)Small ribosomal subunit protein eS21
14N, UC
(sa, Sa)
40S ribosomal protein S26polymer10211742.92UniProt (P62854)
Pfam (PF01283)
Homo sapiens (human)Small ribosomal subunit protein eS26
15O, VC
(sC, SC)
40S ribosomal protein S2polymer22224587.02UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
16P, WC
(sN, SN)
40S ribosomal protein S13polymer15017128.22UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (human)Small ribosomal subunit protein uS15
17Q, XC
(sO, SO)
Small ribosomal subunit protein uS11polymer14015014.22UniProt (P62263)
Pfam (PF00411)
Homo sapiens (human)40S ribosomal protein S14
18R, YC
(sW, SW)
40S ribosomal protein S15apolymer12914734.42UniProt (P62244)
Pfam (PF00410)
Homo sapiens (human)Small ribosomal subunit protein uS8
19S, ZC
(sb, Sb)
Small ribosomal subunit protein eS27polymer839349.02UniProt (P42677)
Pfam (PF01667)
Homo sapiens (human)40S ribosomal protein S27,Metallopan-stimulin 1,MPS-1
20BD, T
(l7, L7)
5S rRNA [Homo sapiens]polymer12038691.92GenBank (23898)Homo sapiens (human)
21CD, U
(l8, L8)
5.8S rRNA [Homo sapiens]polymer15650143.62GenBank (1142736641)Homo sapiens (human)
22DD, V
(lA, LA)
60S ribosomal protein L8polymer24826998.62UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (human)Large ribosomal subunit protein uL2
23ED, W
(lB, LB)
Large ribosomal subunit protein uL3polymer40246079.92UniProt (P39023)
Pfam (PF00297)
Homo sapiens (human)
24FD, X
(lC, LC)
60S ribosomal protein L4polymer36841747.22UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
25GD, Y
(lD, LD)
Large ribosomal subunit protein uL18polymer29334008.32UniProt (P46777)
Pfam (PF14204)
Pfam (PF17144)
Homo sapiens (human)
26HD, Z
(lE, LE)
Large ribosomal subunit protein eL6polymer24728378.82UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (human)60S ribosomal protein L6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
27AA, ID
(lF, LF)
60S ribosomal protein L7polymer22526590.72UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (human)Large ribosomal subunit protein uL30
28BA, JD
(lG, LG)
60S ribosomal protein L7apolymer24127452.52UniProt (P62424)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
29CA, KD
(lH, LH)
60S ribosomal protein L9polymer19021655.32UniProt (P32969)
Pfam (PF00347)
Homo sapiens (human)Large ribosomal subunit protein uL6
30DA, LD
(lI, LI)
Ribosomal protein uL16-likepolymer21324439.82UniProt (Q96L21)
Pfam (PF00252)
Homo sapiens (human)60S ribosomal protein L10-like,Large ribosomal subunit protein uL16-like
31EA, MD
(lJ, LJ)
60S ribosomal protein L11polymer17620086.22UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
32FA, ND
(lL, LL)
Large ribosomal subunit protein eL13polymer21024190.52UniProt (P26373)
Pfam (PF01294)
Homo sapiens (human)
33GA, OD
(lM, LM)
60S ribosomal protein L14polymer13916220.32UniProt (P50914)
Pfam (PF01929)
Homo sapiens (human)CAG-ISL 7,Large ribosomal subunit protein eL14
34HA, PD
(lN, LN)
60S ribosomal protein L15polymer20324076.12UniProt (P61313)
Pfam (PF00827)
Homo sapiens (human)Large ribosomal subunit protein eL15
35IA, QD
(lO, LO)
60S ribosomal protein L13apolymer20123431.12UniProt (P40429)
Pfam (PF00572)
Homo sapiens (human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
36JA, RD
(lP, LP)
60S ribosomal protein L17polymer15317757.62UniProt (P18621)
Pfam (PF00237)
Homo sapiens (human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
37KA, SD
(lQ, LQ)
60S ribosomal protein L18polymer18721556.52UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (human)Large ribosomal subunit protein eL18
38LA, TD
(lR, LR)
60S ribosomal protein L19polymer18722441.02UniProt (P84098)
Pfam (PF01280)
Homo sapiens (human)Large ribosomal subunit protein eL19
39MA, UD
(lS, LS)
60S ribosomal protein L18apolymer17520677.32UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (human)Large ribosomal subunit protein eL20
40NA, VD
(lT, LT)
60S ribosomal protein L21polymer15918478.82UniProt (P46778)
Pfam (PF01157)
Homo sapiens (human)Large ribosomal subunit protein eL21
41OA, WD
(lU, LU)
Heparin-binding protein HBp15polymer10111722.52UniProt (Q7Z4W8)
Pfam (PF01776)
UniProt (by SIFTS) (P35268)
Homo sapiens (human)
42PA, XD
(lV, LV)
60S ribosomal protein L23polymer13113972.42UniProt (P62829)
Pfam (PF00238)
Homo sapiens (human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
43QA, YD
(lX, LX)
60S ribosomal protein L23apolymer12013985.52UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (human)Large ribosomal subunit protein uL23
44RA, ZD
(lY, LY)
60S ribosomal protein L26polymer13415891.82UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (human)Large ribosomal subunit protein uL24
45AE, SA
(lZ, LZ)
60S ribosomal protein L27polymer13515704.62UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (human)Large ribosomal subunit protein eL27
46BE, TA
(la, La)
60S ribosomal protein L27apolymer14716473.32UniProt (P46776)
Pfam (PF00828)
Homo sapiens (human)Large ribosomal subunit protein uL15
47CE, UA
(lb, Lb)
Large ribosomal subunit protein eL29polymer12113965.82UniProt (P47914)
Pfam (PF01779)
Homo sapiens (human)60S ribosomal protein L29,Cell surface heparin-binding protein HIP
48DE, VA
(lc, Lc)
60S ribosomal protein L30polymer9810954.92UniProt (P62888)
Pfam (PF01248)
Homo sapiens (human)Large ribosomal subunit protein eL30
49EE, WA
(ld, Ld)
60S ribosomal protein L31polymer10712635.72UniProt (P62899)
Pfam (PF01198)
Homo sapiens (human)Large ribosomal subunit protein eL31
50FE, XA
(le, Le)
60S ribosomal protein L32polymer12815022.02UniProt (P62910)
Pfam (PF01655)
Homo sapiens (human)Large ribosomal subunit protein eL32
51GE, YA
(lf, Lf)
60S ribosomal protein L35apolymer10912433.52UniProt (P18077)
Pfam (PF01247)
Homo sapiens (human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
52HE, ZA
(lg, Lg)
60S ribosomal protein L34polymer11412994.62UniProt (P49207)
Pfam (PF01199)
Homo sapiens (human)Large ribosomal subunit protein eL34
53AB, IE
(lh, Lh)
60S ribosomal protein L35polymer12214462.42UniProt (P42766)
Pfam (PF00831)
Homo sapiens (human)Large ribosomal subunit protein uL29
54BB, JE
(li, Li)
60S ribosomal protein L36polymer10211915.42UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (human)Large ribosomal subunit protein eL36
55CB, KE
(lj, Lj)
60S ribosomal protein L37polymer8610090.92UniProt (P61927)
Pfam (PF01907)
Homo sapiens (human)G1.16,Large ribosomal subunit protein eL37
56DB, LE
(lk, Lk)
60S ribosomal protein L38polymer698107.82UniProt (P63173)
Pfam (PF01781)
Homo sapiens (human)Large ribosomal subunit protein eL38
57EB, ME
(ll, Ll)
60S ribosomal protein L39polymer506295.62UniProt (P62891)
Pfam (PF00832)
Homo sapiens (human)Large ribosomal subunit protein eL39
58FB, NE
(lm, Lm)
Large ribosomal subunit protein eL40polymer526199.62UniProt (P62987)
Pfam (PF01020)
Homo sapiens (human)60S ribosomal protein L40
59GB, OE
(ln, Ln)
60S ribosomal protein L41polymer243344.32UniProt (P62945)
Pfam (PF05162)
Homo sapiens (human)HG12,Large ribosomal subunit protein eL41
60HB, PE
(lo, Lo)
60S ribosomal protein L36apolymer10512345.82UniProt (P83881)
Pfam (PF00935)
Homo sapiens (human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
61IB, QE
(lp, Lp)
60S ribosomal protein L37apolymer9110168.22UniProt (P61513)
Pfam (PF01780)
Homo sapiens (human)Large ribosomal subunit protein eL43
62JB, RE
(lr, Lr)
60S ribosomal protein L28polymer12514320.82UniProt (P46779)
Pfam (PF01778)
Homo sapiens (human)Large ribosomal subunit protein eL28
63KB, NF
(lz, Lz)
60S ribosomal protein L10apolymer21724879.42UniProt (P62906)
Pfam (PF00687)
Homo sapiens (human)CSA-19,Large ribosomal subunit protein uL1,Neural precursor cell expressed developmentally down-regulated protein 6,NEDD-6
64LB, SE
(sR, SR)
40S ribosomal protein S17polymer13515578.22UniProt (P08708)
Pfam (PF00833)
Homo sapiens (human)Small ribosomal subunit protein eS17
65MB, TE
(sD, SD)
Small ribosomal subunit protein uS3polymer22725172.62UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (human)
66NB, UE
(sF, SF)
40S ribosomal protein S5polymer18921327.72UniProt (P46782)
Pfam (PF00177)
Homo sapiens (human)Small ribosomal subunit protein uS7
67OB, VE
(sK, SK)
40S ribosomal protein S10polymer9811774.02UniProt (P46783)
Pfam (PF03501)
Homo sapiens (human)Small ribosomal subunit protein eS10
68PB, WE
(sP, SP)
Small ribosomal subunit protein uS19polymer12114092.62UniProt (P62841)
Pfam (PF00203)
Homo sapiens (human)40S ribosomal protein S15,RIG protein
69QB, XE
(sQ, SQ)
Small ribosomal subunit protein uS9polymer14416249.12UniProt (P62249)
Pfam (PF00380)
Homo sapiens (human)40S ribosomal protein S16
70RB, YE
(sS, SS)
40S ribosomal protein S18polymer14517029.82UniProt (P62269)
Pfam (PF00416)
Homo sapiens (human)Ke-3,Ke3,Small ribosomal subunit protein uS13
71SB, ZE
(sT, ST)
40S ribosomal protein S19polymer14315822.22UniProt (P39019)
Pfam (PF01090)
Homo sapiens (human)Small ribosomal subunit protein eS19
72AF, TB
(sU, SU)
40S ribosomal protein S20polymer10411765.92UniProt (P60866)
Pfam (PF00338)
Homo sapiens (human)Small ribosomal subunit protein uS10
73BF, UB
(sc, Sc)
40S ribosomal protein S28polymer647263.42UniProt (P62857)
Pfam (PF01200)
Homo sapiens (human)Small ribosomal subunit protein eS28
74CF, VB
(sd, Sd)
40S ribosomal protein S29polymer556559.62UniProt (P62273)
Pfam (PF00253)
Homo sapiens (human)Small ribosomal subunit protein uS14
75DF, WB
(sg, Sg)
Receptor of activated protein C kinase 1polymer31334669.12UniProt (P63244)
Pfam (PF00400)
Homo sapiens (human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
76EF, XB
(sM, SM)
Small ribosomal subunit protein eS12polymer12213652.02UniProt (P25398)
Pfam (PF01248)
Homo sapiens (human)40S ribosomal protein S12
77FF, YB
(sZ, SZ)
Small ribosomal subunit protein eS25polymer758526.12UniProt (P62851)
Pfam (PF03297)
Homo sapiens (human)40S ribosomal protein S25
78GF, ZB
(sf, Sf)
Ubiquitin-40S ribosomal protein S27apolymer677884.32UniProt (P62979)
Pfam (PF01599)
Homo sapiens (human)Ubiquitin carboxyl extension protein 80
79AC, HF
(s2, S2)
18S rRNA [Homo sapiens]polymer1740561332.42Homo sapiens (human)
80BC
(cB)
Elongation factor 2polymer84694322.91UniProt (P13639)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF14492)
Pfam (PF03764)
Pfam (PF00679)
Homo sapiens (human)EF-2
81CC
(aP)
A/P site tRNA [Homo sapiens]polymer7122885.61Homo sapiens (human)
82DC, JF
(pE, Et)
P/E site tRNA [Homo sapiens]polymer7524102.32Homo sapiens (human)
83EC, OF
(ls, Ls)
60S acidic ribosomal protein P0polymer19621507.02UniProt (P05388)
Pfam (PF00466)
Pfam (PF17777)
Homo sapiens (human)60S ribosomal protein L10E,Large ribosomal subunit protein uL10
84FC, MF
(lt, Lt)
60S ribosomal protein L12 [Homo sapiens]polymer14115080.42Pfam (PF03946)
Pfam (PF00298)
UniProt (by SIFTS) (P30050)
Homo sapiens (human)
85AD, GC
(l5, L5)
28S rRNA [Homo sapiens]polymer37401211748.52Homo sapiens (human)
86HC
(LW)
Ribosomal protein L24polymer12414477.01UniProt (A0A994J4A5)
Pfam (PF01246)
UniProt (by SIFTS) (P83731)
Homo sapiens (human)
87IF
(AT)
A/T site tRNA [Homo sapiens]polymer7724765.81Homo sapiens (human)
88KF
(CF)
Putative elongation factor 1-alpha-like 3polymer44148247.31UniProt (Q5VTE0)
Pfam (PF00009)
Pfam (PF03144)
Pfam (PF22594)
Homo sapiens (human)EF-1-alpha-like 3,Eukaryotic elongation factor 1 A-like 3,eEF1A-like 3,Eukaryotic translation elongation factor 1 alpha-1 pseudogene 5
89LF
(Pt)
P site tRNApolymer7423825.21Homo sapiens (human)
90BG, CG, EG, FG, GG...
(lg, lj, lm, lo, lp...)
ZINC IONnon-polymer65.412Chemie (ZN)
91AG, AH, AI, AJ, AK...
(le, s2, l5, L5, L7...)
MAGNESIUM IONnon-polymer24.3510Chemie (MG)
Sequence modifications
cH: 24 - 148 (UniProt: O60869)
PDBExternal DatabaseDetails
Arg 30Gln 32conflict
Ala 32Arg 34conflict
Ala 33-insertion
Ala 34-insertion
cB: 3 - 858 (UniProt: P13639)
PDBExternal DatabaseDetails
-Ala 238deletion
-Lys 239deletion
-Gly 240deletion
-Glu 241deletion
-Gly 242deletion
-Gln 243deletion
-Leu 244deletion
-Gly 245deletion
-Pro 246deletion
-Ala 247deletion
CF: 4 - 444 (UniProt: Q5VTE0)
PDBExternal DatabaseDetails
Asn 311Lys 311conflict
Thr 365Met 365conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains171
Total formula weight6752054.8
Non-Polymers*Number of molecules522
Total formula weight13180.5
All*Total formula weight6765235.2
*Water molecules are not included.

237735

PDB entries from 2025-06-18

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