9AYV
HIV CH505/BG505 SOSIP.v8.1 Env in Complex with V1/V3 Epitope and Anti-Immune Complex pAbs from Rabbit 2474
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (J) | Rabbit Anti-Immune Complex pAb - Predicted Light Chain | polymer | 102 | 8698.7 | 1 | Oryctolagus cuniculus | ||
| 2 | B, C, D (B, D, F) | Transmembrane protein gp41 | polymer | 155 | 17454.7 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | HIV-1 Chimeric CH505/BG505 SOSIP.v8.1 - gp41 |
| 3 | E, F, G (A, C, N) | Surface protein gp120 | polymer | 503 | 56377.3 | 3 | UniProt (by SIFTS) (Q2N0S6) | Human immunodeficiency virus 1 | HIV-1 Chimeric CH505/BG505 SOSIP.v8.1 - gp120 |
| 4 | H, I (H, G) | Rabbit V1/V3 Epitope pAb - Predicted Light Chain | polymer | 97 | 8273.2 | 2 | Oryctolagus cuniculus | ||
| 5 | J (E) | Rabbit V1/V3 Epitope pAb - Predicted Heavy Chain | polymer | 109 | 9294.4 | 1 | Oryctolagus cuniculus | ||
| 6 | AA, CA, DA, K, M... (a, c, d, I, L...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 14 | In PDB GlyTouCan (G42666HT) | |||
| 7 | BA, L, N (b, K, M) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 3 | In PDB GlyTouCan (G15407YE) | |||
| 8 | T, U (T, U) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 2 | In PDB GlyTouCan (G22768VO) | |||
| 9 | W (W) | alpha-D-mannopyranose-(1-6)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 1 | In PDB GlyTouCan (G22573RC) | |||
| 10 | AB, BB, CB, DB, EA... (C, N, B, D, F...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 38 | Chemie (NAG) |
Sequence modifications
B, D, F: 510 - 664 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Arg 510 | Lys 507 | conflict |
| Ser 519 | Phe 516 | conflict |
| Pro 559 | Ile 556 | conflict |
| Cys 561 | Ala 558 | conflict |
| Asp 568 | Leu 565 | conflict |
| His 570 | Val 567 | conflict |
| His 585 | Arg 582 | conflict |
| Cys 605 | Thr 602 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 10 |
| Total formula weight | 256035.6 | |
| Branched | Number of molecules | 20 |
| Total formula weight | 10271.6 | |
| Non-Polymers* | Number of molecules | 38 |
| Total formula weight | 8405.9 | |
| All* | Total formula weight | 274713.1 |
