9AYS
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5, gp120-Interface, and Anti-Immune Complex pAbs from Rh.33203
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (H) | NHP gp120-Interface Epitope pAb - Predicted Heavy Chain | polymer | 121 | 10315.7 | 1 | Macaca mulatta | ||
| 2 | B (L) | NHP gp120-Interface Epitope pAb - Predicted Light Chain | polymer | 101 | 8613.6 | 1 | Macaca mulatta | ||
| 3 | C, E, G (A, C, E) | Surface protein gp120 | polymer | 514 | 57775.8 | 3 | UniProt (Q2N0S6) | Human immunodeficiency virus 1 | HIV BG505 SOSIP.v5.2 (N289/N241) - gp120 |
| 4 | D, F, H (B, D, F) | Transmembrane protein gp41 | polymer | 155 | 17507.0 | 3 | UniProt (Q2N0S6) UniProt (by SIFTS) (D0PUM0) | Human immunodeficiency virus 1 | HIV-1 BG505 SOSIP.v5.2 (N289/N241) - gp41 |
| 5 | I (G) | NHP V5 Epitope pAb - Predicted Light Chain | polymer | 102 | 8698.7 | 1 | Macaca mulatta | ||
| 6 | J (I) | NHP V5 Epitope pAb - Predicted Heavy Chain | polymer | 115 | 9805.1 | 1 | Macaca mulatta | ||
| 7 | K (J) | NHP Anti-Immune Complex pAb - Predicted Heavy Chain | polymer | 104 | 8868.9 | 1 | Macaca mulatta | ||
| 8 | L (K) | NHP Anti-Immune Complex pAb - Predicted Light Chain | polymer | 94 | 8017.9 | 1 | Macaca mulatta | ||
| 9 | M (M) | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 10 | AA, BA, DA, EA, GA... (a, b, d, e, g...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 15 | In PDB GlyTouCan (G42666HT) | |||
| 11 | O, V (O, V) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 2 | In PDB GlyTouCan (G35932AR) | |||
| 12 | Q (Q) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-4)][alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 1073.0 | 1 | In PDB | |||
| 13 | CA, W (c, W) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 910.8 | 2 | In PDB GlyTouCan (G22768VO) | |||
| 14 | FA (f) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 627.6 | 1 | In PDB GlyTouCan (G11411VI) | |||
| 15 | AB, BB, CB, DB, EB... (C, A, D, E, B...) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 43 | Chemie (NAG) |
Sequence modifications
A, C, E: 31 - 510 (UniProt: Q2N0S6)
B, D, F: 510 - 664 (UniProt: Q2N0S6)
| PDB | External Database | Details |
|---|---|---|
| Met -4 | - | initiating methionine |
| Asp -3 | - | expression tag |
| Ala -2 | - | expression tag |
| Met -1 | - | expression tag |
| Lys 0 | - | expression tag |
| Arg 1 | - | expression tag |
| Gly 2 | - | expression tag |
| Leu 3 | - | expression tag |
| Cys 4 | - | expression tag |
| Cys 5 | - | expression tag |
| Val 6 | - | expression tag |
| Leu 7 | - | expression tag |
| Leu 8 | - | expression tag |
| Leu 9 | - | expression tag |
| Cys 10 | - | expression tag |
| Gly 11 | - | expression tag |
| Ala 12 | - | expression tag |
| Val 13 | - | expression tag |
| Phe 14 | - | expression tag |
| Val 15 | - | expression tag |
| Ser 16 | - | expression tag |
| Pro 17 | - | expression tag |
| Ser 18 | - | expression tag |
| Gln 19 | - | expression tag |
| Glu 20 | - | expression tag |
| Ile 21 | - | expression tag |
| His 22 | - | expression tag |
| Ala 23 | - | expression tag |
| Arg 24 | - | expression tag |
| Phe 25 | - | expression tag |
| Arg 26 | - | expression tag |
| Arg 27 | - | expression tag |
| Gly 28 | - | expression tag |
| Ala 29 | - | expression tag |
| Arg 30 | - | expression tag |
| Lys 64 | Glu 63 | conflict |
| Cys 73 | Ala 72 | conflict |
| Thr 240 | Pro 239 | conflict |
| Asn 241 | Ser 240 | conflict |
| Ile 271 | Met 270 | conflict |
| Leu 288 | Phe 287 | conflict |
| Glu 290 | Thr 289 | conflict |
| Ser 291 | Pro 290 | conflict |
| Trp 314 | Ala 313 | conflict |
| Asn 331 | Thr 330 | conflict |
| Cys 500 | Ala 498 | conflict |
| Arg 508 | Glu 506 | conflict |
| Arg 509 | Lys 507 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Arg 510 | Lys 507 | conflict |
| Pro 559 | Ile 556 | conflict |
| Cys 561 | Ala 558 | conflict |
| Cys 605 | Thr 602 | conflict |
| Thr 613 | Ser 610 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 12 |
| Total formula weight | 280168.1 | |
| Branched | Number of molecules | 22 |
| Total formula weight | 11323.6 | |
| Non-Polymers* | Number of molecules | 43 |
| Total formula weight | 9511.9 | |
| All* | Total formula weight | 301003.6 |
