9AY6

HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5 pAb from Rh.33203

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, C, E (A, C, E)	Surface protein gp120	polymer	514	57775.8	3	UniProt (Q2N0S6)	Human immunodeficiency virus 1	HIV BG505 SOSIP.v5.2 (N289/N241) - gp120
2	B, D, F (B, D, F)	Transmembrane protein gp41	polymer	155	17507.0	3	UniProt (Q2N0S6) UniProt (by SIFTS) (D0PUM0)	Human immunodeficiency virus 1	HIV-1 BG505 SOSIP.v5.2 (N289/N241) - gp41
3	G (H)	NHP Polyclonal Antibody V5 Epitope - Predicted Light Chain	polymer	102	8698.7	1		Macaca mulatta
4	H (L)	NHP Polyclonal Antibody V5 Epitope - Predicted Heavy Chain	polymer	117	9975.3	1		Macaca mulatta
5	AA, BA, CA, DA, FA... (a, b, c, d, f...)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		424.4	25	In PDB GlyTouCan (G42666HT)
6	L (K)	alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		748.7	1	In PDB GlyTouCan (G81315DD)
7	R (R)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		383.3	1	In PDB GlyTouCan (G90333CG)
8	EA, V (e, V)	alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		910.8	2	In PDB GlyTouCan (G22768VO)
9	GA, KA (g, k)	beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	branched		586.5	2	In PDB GlyTouCan (G15407YE)
10	AB, BB, CB, DB, EB... (C, D, E, A, F...)	2-acetamido-2-deoxy-beta-D-glucopyranose	non-polymer		221.2	31	Chemie (NAG)

Sequence modifications

A, C, E: 31 - 510 (UniProt: Q2N0S6)

PDB	External Database	Details
Met -4	-	initiating methionine
Asp -3	-	expression tag
Ala -2	-	expression tag
Met -1	-	expression tag
Lys 0	-	expression tag
Arg 1	-	expression tag
Gly 2	-	expression tag
Leu 3	-	expression tag
Cys 4	-	expression tag
Cys 5	-	expression tag
Val 6	-	expression tag
Leu 7	-	expression tag
Leu 8	-	expression tag
Leu 9	-	expression tag
Cys 10	-	expression tag
Gly 11	-	expression tag
Ala 12	-	expression tag
Val 13	-	expression tag
Phe 14	-	expression tag
Val 15	-	expression tag
Ser 16	-	expression tag
Pro 17	-	expression tag
Ser 18	-	expression tag
Gln 19	-	expression tag
Glu 20	-	expression tag
Ile 21	-	expression tag
His 22	-	expression tag
Ala 23	-	expression tag
Arg 24	-	expression tag
Phe 25	-	expression tag
Arg 26	-	expression tag
Arg 27	-	expression tag
Gly 28	-	expression tag
Ala 29	-	expression tag
Arg 30	-	expression tag
Lys 64	Glu 63	conflict
Cys 73	Ala 72	conflict
Thr 240	Pro 239	conflict
Asn 241	Ser 240	conflict
Ile 271	Met 270	conflict
Leu 288	Phe 287	conflict
Glu 290	Thr 289	conflict
Ser 291	Pro 290	conflict
Trp 314	Ala 313	conflict
Asn 331	Thr 330	conflict
Cys 500	Ala 498	conflict
Arg 508	Glu 506	conflict
Arg 509	Lys 507	conflict

B, D, F: 510 - 664 (UniProt: Q2N0S6)

PDB	External Database	Details
Arg 510	Lys 507	conflict
Pro 559	Ile 556	conflict
Cys 561	Ala 558	conflict
Cys 605	Thr 602	conflict
Thr 613	Ser 610	conflict

Contents of the asymmetric unit

Polymers	Number of chains	8
	Total formula weight	244522.2
Branched	Number of molecules	31
	Total formula weight	14736.8
Non-Polymers*	Number of molecules	31
	Total formula weight	6857.4
All*	Total formula weight	266116.5

*Water molecules are not included.